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Non-sinusoidal Waveform in Temperature-Compensated Circadian Oscillations

机译:温度补偿的昼夜节律振荡中的非正弦波形

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摘要

Time series of biological rhythms are of various shapes. Here, we investigated the waveforms of circadian rhythms in gene-protein dynamics using a newly developed, to our knowledge, index to quantify the degree of distortion from a sinusoidal waveform. In general, most biochemical reactions accelerate with increasing temperature, but the period of circadian rhythms remains relatively stable with temperature change, a phenomenon known as “temperature compensation.” Despite extensive research, the mechanism underlying this remains unclear. To understand the mechanism, we used transcriptional-translational oscillator models for circadian rhythms in the fruit fly Drosophila and mammals. Given the assumption that reaction rates increase with temperature, mathematical analyses revealed that temperature compensation required waveforms that are more nonsinusoidal at higher temperatures. We then analyzed a post-translational oscillator (PTO) model of cyanobacteria circadian rhythms. Because the structure of the PTO is different from that of the transcriptional-translational oscillator, the condition for temperature compensation would be expected to differ. Unexpectedly, the computational analysis again showed that temperature compensation in the PTO model required a more nonsinusoidal waveform at higher temperatures. This finding held for both models even with a milder assumption that some reaction rates do not change with temperature, which is consistent with experimental evidence. Together, our theoretical analyses predict that the waveform of circadian gene-activity and/or protein phosphorylation rhythms would be more nonsinusoidal at higher temperatures, even when there are differences in the network structures.
机译:生物节律的时间序列具有各种形状。在这里,我们使用一种新开发的索引来调查基因-蛋白质动力学中昼夜节律的波形,据我们所知,该指标可量化正弦波形的失真程度。通常,大多数生化反应都随着温度的升高而加速,但昼夜节律的周期随温度变化而保持相对稳定,这种现象称为“温度补偿”。尽管进行了广泛的研究,但其机制尚不清楚。为了了解这种机制,我们使用了果蝇果蝇和哺乳动物昼夜节律的转录-翻译振荡器模型。在假定反应速率随温度增加的前提下,数学分析表明温度补偿需要的波形在较高温度下更加非正弦。然后,我们分析了蓝细菌昼夜节律的翻译后振荡器(PTO)模型。由于PTO的结构与转录翻译振荡器的结构不同,因此可以预期温度补偿的条件会有所不同。出乎意料的是,计算分析再次表明,在较高的温度下,PTO模型中的温度补偿需要更非正弦的波形。即使较温和的假设,即某些反应速率不会随温度变化,这一发现仍适用于两个模型,这与实验证据是一致的。总之,我们的理论分析预测,即使网络结构存在差异,昼夜节律的基因活性和/或蛋白质磷酸化节律的波形在非高温下也将更加非正弦。

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