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Genetic improvement of laying hens viability using survival analysis

机译:利用生存分析对蛋鸡生存能力进行遗传改良

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摘要

The survival of about eight generations of a large strain of laying hens was analysed separating the rearing period (RP) from the production period (PP), after hens were housed. For RP (respectively PP), 97.8% (resp., 94.1% ) of the 109 160 (resp., 100 665) female records were censored after 106 days (resp., 313 days) on the average. A Cox proportional hazards model stratified by flock (= season) and including a hatch-within-flock (HWF) fixed effect seemed to reasonably fit the RP data. For PP, this model could be further simplified to a non-stratified Weibull model. The extension of these models to sire-dam frailty (mixed) models permitted the estimation of the sire genetic variances at 0.261 ± 0.026 and 0.088 ± 0.010 for RP and PP, respectively. Heritabilities on the log scale were equal to 0.48 and 0.19. Non-additive genetic effects could not be detected. Selection was simulated by evaluating all sires and dams, after excluding all records from the last generation. Then, actual parents of this last generation were distributed into four groups according to their own pedigree index. Raw survivor curves of the progeny of extreme parental groups substantially differed (e.g., by 1.7% at 300 days for PP), suggesting that selection based on solutions from the frailty models could be efficient, despite the very large proportion of censored records.
机译:在饲养母鸡后,将饲养期(RP)与生产期(PP)分开,分析了大约八代大产蛋鸡的存活率。对于RP(分别为PP),在平均106天(分别为313天)之后,对109160(分别为100665)的97.8%(分别为94.1%)进行了审查。以鸡群(=季节)分层并包括鸡群内孵化率(HWF)固定效应的Cox比例风险模型似乎合理地拟合了RP数据。对于PP,可以将该模型进一步简化为非分层的Weibull模型。通过将这些模型扩展到父坝脆弱性(混合)模型,可以估计RP和PP的父亲遗传变异分别为0.261±0.026和0.088±0.010。对数刻度的遗传力分别为0.48和0.19。无法检测到非加性遗传效应。在排除上一代的所有记录之后,通过评估所有父系和大坝来模拟选择。然后,根据他们的家谱指数,将最后一代的实际父母分为四个组。极端父母群体的后代的原始幸存者曲线有显着差异(例如,PP在300天时下降了1.7%),这表明尽管审查记录的比例很大,但基于脆弱模型的解决方案进行选择仍然有效。

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