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Optimization of Complex Cancer Morphology Detection Using the SIVQ Pattern Recognition Algorithm

机译:使用SIVQ模式识别算法优化复杂癌症形态学检测

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摘要

For personalization of medicine, increasingly clinical and demographic data are integrated into nomograms for prognostic use, while molecular biomarkers are being developed to add independent diagnostic, prognostic, or management information. In a number of cases in surgical pathology, morphometric quantitation is already performed manually or semi-quantitatively, with this effort contributing to diagnostic workup. Digital whole slide imaging, coupled with emerging image analysis algorithms, offers great promise as an adjunctive tool for the surgical pathologist in areas of screening, quality assurance, consistency, and quantitation. We have recently reported such an algorithm, SIVQ (Spatially Invariant Vector Quantization), which avails itself of the geometric advantages of ring vectors for pattern matching, and have proposed a number of potential applications. One key test, however, remains the need for demonstration and optimization of SIVQ for discrimination between foreground (neoplasm- malignant epithelium) and background (normal parenchyma, stroma, vessels, inflammatory cells). Especially important is the determination of relative contributions of each key SIVQ matching parameter with respect to the algorithm’s overall detection performance. Herein, by combinatorial testing of SIVQ ring size, sub-ring number, and inter-ring wobble parameters, in the setting of a morphologically complex bladder cancer use case, we ascertain the relative contributions of each of these parameters towards overall detection optimization using urothelial carcinoma as a use case, providing an exemplar by which this algorithm and future histology-oriented pattern matching tools may be validated and subsequently, implemented broadly in other appropriate microscopic classification settings.
机译:为了医学的个性化,越来越多的临床和人口统计学数据被整合到诺模图中以用于预后,同时正在开发分子生物标志物以添加独立的诊断,预后或管理信息。在外科病理学中的许多情况下,形态计量学定量已经手动或半定量地进行,这种努力有助于诊断工作。数字化全玻片成像与新兴的图像分析算法相结合,为手术病理学家在筛查,质量保证,一致性和定量分析领域的辅助工具提供了广阔的前景。最近,我们已经报道了这种算法SIVQ(空间不变矢量量化),该算法利用环形矢量的几何优势进行模式匹配,并提出了许多潜在的应用。然而,一项关键测试仍然是需要对SIVQ进行演示和优化,以区分前景(肿瘤-恶性上皮)和背景(正常实质,间质,血管,炎性细胞)。确定每个关键SIVQ匹配参数相对于算法整体检测性能的相对贡献尤其重要。在此,通过对SIVQ环尺寸,子环数和环间摆动参数的组合测试,在形态学复杂的膀胱癌用例的设置中,我们确定了这些参数中的每一个对使用尿路上皮进行总体检测优化的相对贡献癌症作为用例,提供了一个示例,通过该示例可以验证此算法和面向未来组织学的模式匹配工具,并随后在其他适当的微观分类设置中广泛实施。

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