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Towards complete deconstruction of cotton transcriptional landscape

         

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cqvip:Recently,Wang et al.systematically explored the transcription landscape in diploid cotton Gossypium arboreum.In the study,they integrated four high-throughput sequencing techniques,including Pacbio sequencing,strandspecific RNA sequencing(ss RNA-seq),Cap analysis gene expression sequencing(CAGE-seq),and Poly A sequencing(Poly A-seq)to profile the RNA transcriptome of G.arboreum.They developed a pipeline,IGIA to construct accurate gene structure annotation based on the updated genome of G.arboreum and the multi-strategic RNA-seq data.Their study revealed some intriguing phenomena and potential novel mechanisms in the regulation of RNA transcription in plants,and also provided valuable resources for further functional genomic research in cotton.

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