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Construction of Oryza Sativa genome contigs by fingerprint strategy

机译:指纹图谱构建水稻基因组重叠群

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We described the construction of BAC contigs of the genome of a indica variety of Oryza sativa.Guang Lu Ai 4. An entire representative(Sixfold coverage of rice chromosomes)and genetically stable BAC library of rice genome constructed in this lab has been systematically analysed by restriction enzyme fragmentation and polyacrylamide gel electrophoresis.And all the images thus obtained were subject to image-processing,which consisted of preliminary location of bands,cooperative tracking of lanes by correlation of adjacent bads.a precise densitometric pass,alignment at the marker bands with the standard,optional interactive editing,and normalization of the accepted bands.The contigs were generated based on the Computer Software specially designed for genome mapping.The number of contigs with 600 kb in length on average was 464.of contigs with 1000kb in length on average was 107; of contigs with 1500 kb in length on average was Construction of Oryza Sativa genome contigs.23.Therefor,all the contigs we have obtained ampunted up to 420 megabases in length.Considering the size of rice genome(430 megabased),the contigs generated in this lab have covered nearly 98% of the rice genome.We are now in the process of mapping the contigs to chromosomes.
机译:我们描述了一种水稻品种variety稻基因组的BAC重叠群的构建。广陆爱4.通过该系统,系统分析了该实验室构建的水稻基因组的整个代表(水稻染色体的六倍覆盖)和遗传稳定的BAC文库。限制性内切酶片段化和聚丙烯酰胺凝胶电泳。对由此获得的所有图像进行图像处理,包括条带的初步定位,通过与相邻缺陷的相关性合作跟踪泳道,精确的光密度通过,标记条带与标准的,可选的交互式编辑和接受带的归一化。重叠群是根据专门为基因组图谱设计的计算机软件生成的。平均长度为600 kb的重叠群的数量为464。平均为107;平均长度为1500 kb的重叠群的构建是Oryza Sativa基因组重叠群的构建。23。因此,我们获得的所有重叠群的最大长度为420 megabases。考虑到水稻基因组的大小(430 megabased),该重叠群产生于该实验室涵盖了将近98%的水稻基因组。我们目前正在将重叠群映射到染色体。

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