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Computing Asymmetric Median Tree of Two Trees via Better Bipartite Matching Algorithm

机译:通过更好的双链匹配算法计​​算两棵树的不对称中值树

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Maximum bipartite matching is a fundamental problem in computer science with many applications. The Hopcroft Karp algorithm can find a maximum bipartite matching of a bipartite graph G in O({the square root of}nm) time where n and m are the number of nodes and edges, respectively, in the bipartite graph G. However, when G is dense (i.e., m = O(n~2)), the Hopcroft-Karp algorithm runs in O(n~(2.5)) time. In this paper, we consider a special case where the bipartite graph G is formed as a union of l complete bipartite graphs. In such case, even when G has O(n~2) edges, we show that a maximum bipartite graph can be found in O({the square root of}n(n+l)log n) time. We also describe how to apply our solution to compute the asymmetric median tree of two phylogenetic trees. We improve the running time from O(n~(2.5)) to O(n~(1.5) log~3 n).
机译:最大两分匹配是计算机科学的基本问题,具有许多应用。 Hopcroft Karp算法可以在o({nm的平方根)的时间中找到二分钟图g的最大双链匹配,其中n和m分别是在二分图G中的节点和边缘的数量。然而,当时,何时g是致密的(即,m = o(n〜2)),Hopcroft-Karp算法在O(n〜(2.5))时间内运行。在本文中,我们考虑了一种特殊情况,其中二分标图G形成为L完全二分图的联合。在这种情况下,即使G有O(n〜2)边缘,我们也表明最大两分图可以在O({n} n(n + l)log n)时间中找到。我们还介绍了如何应用我们的解决方案来计算两个系统发育树的非对称中位树。我们将运行时间从O(n〜(2.5))改善到O(n〜(1.5)log〜3 n)。

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