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Ultrafast image reconstruction of a dual-head PET system by use of CUDA architecture

机译:采用CUDA架构的二元宠物系统超快图像重建

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Positron emission tomography (PET) is an important imaging modality in both clinical usage and research studies. For small-animal PET imaging, it is of major interest to improve the sensitivity and resolution. We have developed a compact high-sensitivity PET system that consisted of two large-area panel PET detector heads. The highly accurate system response matrix can be computed by use of Monte Carlo simulations, and stored for iterative reconstruction methods. The detector head employs 2.1 x 2.1 x 20 mm~3 LSO/LYSO crystals of pitch size equal to 2.4 mm, and thus will produce more than 224 millions lines of response (LORs). By exploiting the symmetry property in the dual-head system, the computational demands can be dramatically reduced. Nevertheless, the tremendously large system size and repetitive reading of system response matrix from the hard drive will result in extremely long reconstruction times. The implementation of an ordered subset expectation maximization (OSEM) algorithm on a CPU system (four Athlon x64 2.0 GHz PCs) took about 2 days for 1 iteration. Consequently, it is imperative to significantly accelerate the reconstruction process to make it more useful for practical applications. Specifically, the graphic processing unit (GPU), which possesses highly parallel computational architecture of computing units can be exploited to achieve a substantial speedup. In this work, we employed the state-of-art GPU, NVIDIA Tesla C2050 based on the Fermi-generation of the compute united device architecture (CUDA) architecture, to yield a reconstruction process within a few minutes. We demonstrated that reconstruction times can be drastically reduced by using the GPU. The OSEM reconstruction algorithms were implemented employing both GPU-based and CPU-based codes, and their computational performance was quantitatively analyzed and compared.
机译:正电子发射断层扫描(PET)是临床使用和研究研究中的重要成像方式。对于小动物宠物成像,提高敏感性和分辨率是重大兴趣。我们开发了一种紧凑的高灵敏度PET系统,包括两个大区域PET探测器头。高精度的系统响应矩阵可以通过使用蒙特卡罗模拟来计算,并存储用于迭代重建方法。探测器头使用2.1 x 2.1 x 20 mm〜3 LSO / Lyso晶体,间距等于2.4 mm,因此将产生超过224百万的响应线(LOR)。通过利用双头系统中的对称性,可以大大减少计算需求。尽管如此,来自硬盘驱动器的系统响应矩阵的大量大量系统尺寸和重复读数将导致极其长的重建时间。在CPU系统上实现有序的子集预期最大化(OSEM)算法(四个Athlon X64 2.0 GHz PCS)为1次迭代约2天。因此,必须显着加速重建过程,使其对实际应用更有用。具体地,可以利用具有高度平行计算架构的计算单元的图形处理单元(GPU)来实现大幅度的加速。在这项工作中,我们雇用了最先进的GPU,基于Compute United Device Architecture(CUDA)架构的Fermi-Meforgation,在几分钟内产生重建过程。我们证明,通过使用GPU,可以大幅度减少重建时间。通过基于GPU和基于CPU的代码实现了OSEM重建算法,并且它们的计算性能被定量分析并进行比较。

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