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Combining Deep Learning and Multi-atlas Label Fusion for Automated Placenta Segmentation from 3DUS

机译:与3DUS自动胎盘分割的深度学习和多地图集标签融合

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In recent years there is growing interest in studying the placenta in vivo. However, 3D ultrasound images (3DUS) are typically very noisy, and the placenta shape and position are highly variable. As such, placental segmentation efforts to date have focused on interactive methods that require considerable user input, or automated methods with relatively low performance and various limitations. We propose a novel algorithm using a combination of deep learning and multi-atlas joint label fusion (JLF) methods for automated segmentation of the placenta in 3DUS images. We extract 2D cross-sections of the ultrasound cone beam with a variety of orientations from the 3DUS images and train a convolutional neural network (CNN) on these slices. We use the prediction by the CNN to initialize the multi-atlas JLF algorithm. The posteriors obtained by the CNN and JLF models are combined to enhance the overall segmentation performance. The method is evaluated on a dataset of 47 patients in the first trimester. We perform 4-fold cross-validation and achieve a mean Dice coefficient of 86.3±5.3 for the test folds. This is a substantial increase in accuracy compared to existing automated methods and is comparable to the performance of semi-automated methods currently considered the bronze standard In placenta segmentation.
机译:近年来,在体内研究胎盘越来越兴趣。然而,3D超声图像(3DU)通常非常嘈杂,并且胎盘形状和位置是高度可变的。因此,迄今为止的胎盘分割努力专注于需要相当大的用户输入的交互式方法,或具有相对低性能和各种限制的自动化方法。我们提出了一种新颖的算法,使用深度学习和多阿特拉斯联合标签融合(JLF)方法的组合,用于3DUS图像中胎盘的自动分割。我们用来自3DU图像的各种取向提取超声锥梁的2D横截面,并在这些切片上训练卷积神经网络(CNN)。我们使用CNN的预测来初始化多ATLAS JLF算法。组合CNN和JLF模型获得的后部,以增强整体分割性能。该方法在第一个三个月的47例患者的数据集上进行评估。我们执行4倍的交叉验证,实现86.3±5.3的平均骰子系数,用于测试折叠。与现有的自动化方法相比,这是准确性的显着提高,并且与当前认为胎盘分割中的半自动化方法的性能相当。

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