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A fast reconstruction method for super-resolution localization microscopy with gOMP

机译:使用gOMP的超分辨率定位显微镜的快速重建方法

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Super-resolution localization microscopy (SRLM) breaks the diffraction limit, making possible the observation ofsub-cellular structures. Challenges remain in SRLM due to a long data acquisition time. To overcome the limitation, themethods based on compressed sensing (CS) have been proposed. However, at the current stage, the widely usedsparsity-based localization methods, e.g., interior point method (IPM), is computationally intensive. To address theproblem, in this paper, we introduce an alternative CS reconstruction method to super-resolution imaging model, whichis achieved by using gOMP (generalized Orthogonal Matching Pursuit). A series of numerical simulations with varyingemitter densities and signal-to-noise rations (SNRs) are performed to evaluate the performance of gOMP method. Theresults show that whatever gOMP or IPM is used in SRLM, the obtained localization accuracy is similar. But, thedata-processing time of gOMP can be significantly reduced (> 100 times) than the previous reported IPM method. As aresult, gOMP provides the potential for reducing the computational cost while maintaining a desired spatial resolution,which is beneficial for SRLM imaging.
机译:超分辨率定位显微镜(SRLM)打破了衍射极限,使人们有可能观察到 亚细胞结构。由于数据采集时间长,SRLM仍然面临挑战。为了克服限制, 已经提出了基于压缩感测(CS)的方法。但是,在现阶段,被广泛使用 基于稀疏性的定位方法(例如,内部点方法(IPM))在计算上比较密集。解决 问题,在本文中,我们介绍了一种超分辨率成像模型的替代CS重建方法,该方法 通过使用gOMP(广义正交匹配追踪)实现。一系列变化的数值模拟 执行发射极密度和信噪比(SNR)来评估gOMP方法的性能。这 结果表明,无论在SRLM中使用gOMP还是IPM,获得的定位精度都是相似的。但是, 与以前报道的IPM方法相比,gOMP的数据处理时间可以大大减少(> 100倍)。作为一个 结果,gOMP提供了在保持所需空间分辨率的同时降低计算成本的潜力, 这对于SRLM成像是有益的。

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