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Quantitative phase retrieval reconstruction from in-line hologram using a new proximal operator: application to microscopy of bacteria and tracking of droplets

机译:使用新的近端算子从在线全息图中重建定量相位检索:应用于细菌的显微镜检查和液滴跟踪

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Phase retrieval reconstruction is a central problem in digital holography, with various applications in microscopy, biomedical imaging, fluid mechanics. In an in-line configuration, the particular difficulty is the non-linear relation between the object phase and the recorded intensity of the holograms, leading to high indeterminations in the reconstructed phase. Thus, only efficient constraints and a priori information, combined with a finer model taking into account the non-linear behaviour of image formation, will allow to get a relevant and quantitative phase reconstruction. Inverse problems approaches are well suited to address these issues, only requiring a direct model of image formation and allowing the injection of priors and constraints on the objects to reconstruct, and hence offer good warranties on the optimality of the expected solution. In this context, following our previous works in digital in-line holography, we propose a regularized reconstruction method that includes several physically-grounded constraints such as bounds on transmittance values, maximum/minimum phase, spatial smoothness or the absence of any object in parts of the field of view. To solve the non-convex and non-smooth optimization problem induced by our modeling, a variable splitting strategy is applied and the closed-form solution of the sub-problem (the so-called proximal operator) is derived. The resulting algorithm is efficient and is shown to lead to quantitative phase estimation of micrometric objects on reconstructions of in-line holograms simulated with advanced models using Mie theory. Then we discuss the quality of reconstructions from experimental inline holograms obtained from two different applications of in-line digital holography: tracking of an evaporating droplet (size ~ 100μm) and microscopy of bacterias (size μ 1μm). The reconstruction algorithm and the results presented in this proceeding have been initially published in [Jolivet et at., 2018].
机译:相位恢复重建是数字全息术的中心问题,在显微镜,生物医学成像,流体力学中有各种应用。在串联配置中,特别困难是物体相位与全息图的记录强度之间存在非线性关系,从而导致在重建相位中存在较高的不确定性。因此,只有有效的约束条件和先验信息,再加上考虑到图像形成的非线性行为的更精细的模型,才能获得相关且定量的相位重建。逆问题方法非常适合解决这些问题,只需要一个直接的图像形成模型,并允许先验和约束条件注入到待重建的对象上,从而为预期解决方案的最优性提供了良好的保证。在此背景下,根据我们先前在数字在线全息术中的工作,我们提出了一种规范化的重建方法,该方法包括一些物理上受约束的条件,例如透射率值的界限,最大/最小相位,空间平滑度或零件中不存在任何物体的视野。为了解决由我们的建模引起的非凸且非平滑的优化问题,应用了变量拆分策略,并得出了子问题的闭式解(所谓的近端算子)。所产生的算法是有效的,并且显示出可以使用Mie理论对高级模型模拟的在线全息图进行重建,从而对微米级对象进行定量相位估计。然后,我们讨论了从在线全息技术的两种不同应用中获得的实验性在线全息图的重建质量:跟踪蒸发液滴(大小约100μm)和显微镜观察细菌(大小1μm)。该程序中提出的重建算法和结果已最初发表在[Jolivet等人,2018]中。

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