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Contextual Fibre Growth to Generate Realistic Axonal Packing for Diffusion MRI Simulation

机译:上下文纤维生长以生成用于弥散MRI模拟的逼真的轴突堆积

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This paper presents ConFiG, a method for generating white matter (WM) numerical phantoms with more realistic orientation dispersion and packing density. Numerical phantoms are commonly used in the validation of diffusion MRI (dMRI) techniques so it is important that they are as realistic as possible. Current numerical phantoms either oversimplify the complex morphology of WM or are unable to produce realistic orientation dispersion at high packing density. The highest packing density and orientation dispersion achieved so far is only 20% at 10°. ConFiG takes advantage of a shift of paradigm: rather than 'packing fibres', our algorithm 'grows fibres' contextually and efficiently, attempting to produce a substrate with desired morphological priors (orientation dispersion, packing density and diameter distribution), whilst avoiding intersection between fibres. The potential of ConFiG is demonstrated by reaching the highest packing density and orientation dispersion ever, to our knowledge (25% at 35°). The algorithm is compared with a 'brute force' growth approach showing that it is much more efficient, being O(n) compared to the O(n~2) brute-force method. The application of the method to dMRI is demonstrated with simulations of diffusion-weighted MR signal in three example substrates with differing orientation-dispersions, packing-densities and permeabilities.
机译:本文介绍了ConFiG,这是一种用于生成具有更逼真的方向色散和堆积密度的白质(WM)数字体模的方法。数字体模通常用于验证弥散MRI(dMRI)技术,因此重要的是它们必须尽可能逼真。当前的数字幻像要么简化了WM的复杂形态,要么无法在高堆积密度下产生逼真的取向分散。到目前为止,在10°时达到的最高堆积密度和取向分散度仅为20%。 ConFiG利用范式转换的优势:我们的算法不是“填充纤维”,而是根据上下文有效地“生长纤维”,尝试生产具有所需形态先验(方向分散,填充密度和直径分布)的基材,同时避免了两者之间的交叉纤维。据我们所知,通过达到最高的堆积密度和方向分散性,可以证明ConFiG的潜力(在35°时为25%)。该算法与“蛮力”增长方法进行了比较,表明该算法效率更高,与O(n〜2)蛮力方法相比为O(n)。通过在三个方向不同,取向密度,堆积密度和磁导率不同的示例基板中模拟扩散加权MR信号,证明了该方法在dMRI中的应用。

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