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Deep Recurrent Level Set for Segmenting Brain Tumors

机译:深度复发水平集,用于分割脑肿瘤

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摘要

Variational Level Set (VLS) has been a widely used method in medical segmentation. However, segmentation accuracy in the VLS method dramatically decreases when dealing with intervening factors such as lighting, shadows, colors, etc. Additionally, results are quite sensitive to initial settings and are highly dependent on the number of iterations. In order to address these limitations, the proposed method incorporates VLS into deep learning by defining a novel end-to-end trainable model called as Deep Recurrent Level Set (DRLS). The proposed DRLS consists of three layers, i.e., Convolutional layers, Deconvolutional layers with skip connections and LevelSet layers. Brain tumor segmentation is taken as an instant to illustrate the performance of the proposed DRLS. Convolutional layer learns visual representation of brain tumor at different scales. Brain tumors occupy a small portion of the image, thus, deconvolutional layers are designed with skip connections to obtain a high quality feature map. Level-Set Layer drives the contour towards the brain tumor. In each step, the Convolutional Layer is fed with the LevelSet map to obtain a brain tumor feature map. This in turn serves as input for the LevelSet layer in the next step. The experimental results have been obtained on BRATS2013, BRATS2015 and BRATS2017 datasets. The proposed DRLS model improves both computational time and segmentation accuracy when compared to the classic VLS-based method. Additionally, a fully end-to-end system DRLS achieves state-of-the-art segmentation on brain tumors.
机译:变分水平集(VLS)在医学细分中已被广泛使用。但是,当处理诸如照明,阴影,颜色等中间因素时,VLS方法中的分割精度会大大降低。此外,结果对初始设置非常敏感,并且高度依赖于迭代次数。为了解决这些限制,提出的方法通过定义称为深度递归水平集(DRLS)的新型端到端可训练模型,将VLS纳入深度学习。提出的DRLS包括三层,即卷积层,具有跳过连接的反卷积层和LevelSet层。以脑肿瘤分割为例来说明所提出的DRLS的性能。卷积层学习不同比例的脑肿瘤的视觉表示。脑肿瘤仅占据图像的一小部分,因此,将反卷积层设计为具有跳过连接以获取高质量的特征图。水平设置层将轮廓线朝向脑肿瘤。在每个步骤中,向卷积层提供LevelSet贴图以获得脑肿瘤特征图。依次将其用作下一步的LevelSet层的输入。实验结果已在BRATS2013,BRATS2015和BRATS2017数据集上获得。与经典的基于VLS的方法相比,所提出的DRLS模型提高了计算时间和分割精度。此外,完整的端到端系统DRLS实现了对脑肿瘤的最新分割。

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