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Joint Reconstruction and Segmentation of 7T-like MR Images from 3T MRI Based on Cascaded Convolutional Neural Networks

机译:基于级联卷积神经网络的3T MRI 7T类MR图像的联合重建和分割

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7T MRI scanner provides MR images with higher resolution and better contrast than 3T MR scanners. This helps many medical analysis tasks, including tissue segmentation. However, currently there is a very limited number of 7T MRI scanners worldwide. This motivates us to propose a novel image post-processing framework that can jointly generate high-resolution 7T-like images and their corresponding high-quality 7T-like tissue segmentation maps, solely from the routine 3T MR images. Our proposed framework comprises two parallel components, namely (1) reconstruction and (2) segmentation. The reconstruction component includes the multi-step cascaded convolutional neural networks (CNNs) that map the input 3T MR image to a 7T-like MR image, in terms of both resolution and contrast. Similarly, the segmentation component involves another paralleled cascaded CNNs, with a different architecture, to generate high-quality segmentation maps. These cascaded feedbacks between the two designed paralleled CNNs allow both tasks to mutually benefit from each another when learning the respective reconstruction and segmentation mappings. For evaluation, we have tested our framework on 15 subjects (with paired 3T and 7T images) using a leave-one-out cross-validation. The experimental results show that our estimated 7T-like images have richer anatomical details and better segmentation results, compared to the 3T MRI. Furthermore, our method also achieved better results in both reconstruction and segmentation tasks, compared to the state-of-the-art methods.
机译:7T MRI扫描仪比3T MR扫描仪提供更高的分辨率和更好的对比度的MR图像。这有助于许多医学分析任务,包括组织分割。但是,目前世界范围内7T MRI扫描仪的数量非常有限。这促使我们提出一种新颖的图像后处理框架,该框架可以仅从常规3T MR图像联合生成高分辨率的7T样图像及其相应的高质量7T样组织分割图。我们提出的框架包括两个并行的组件,即(1)重构和(2)分段。重建组件包括多步级联卷积神经网络(CNN),这些神经网络在分辨率和对比度方面将输入的3T MR图像映射到类似7T的MR图像。类似地,分割组件还涉及另一个并行的级联CNN,它们具有不同的体系结构,以生成高质量的分割图。在学习各自的重构和分段映射时,两个设计的并行CNN之间的这些级联反馈使这两个任务可以相互受益。为了进行评估,我们使用留一法交叉验证对15个主题(带有配对的3T和7T图像)测试了我们的框架。实验结果表明,与3T MRI相比,我们估计的7T样图像具有更丰富的解剖学细节和更好的分割结果。此外,与最新方法相比,我们的方法在重建和分割任务上也都取得了更好的结果。

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