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A Stochastic Hybrid Approximation for Chemical Kinetics Based on the Linear Noise Approximation

机译:基于线性噪声逼近的化学动力学随机混合逼近

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The Linear Noise Approximation (LNA) is a continuous approximation of the CME, which improves scalability and is accurate for those reactions satisfying the leap conditions. We formulate a novel stochastic hybrid approximation method for chemical reaction networks based on adaptive partitioning of the species and reactions according to leap conditions into two classes, one solved numerically via the CME and the other using the LNA. The leap criteria are more general than partitioning based on population thresholds, and the method can be combined with any numerical solution of the CME. We then use the hybrid model to derive a fast approximate model checking algorithm for Stochastic Evolution Logic (SEL). Experimental evaluation on several case studies demonstrates that the techniques are able to provide an accurate stochastic characterisation for a large class of systems, especially those presenting dynamical stiffness, resulting in significant improvement of computation time while still maintaining scalability.
机译:线性噪声近似(LNA)是CME的连续近似,它提高了可伸缩性,并且对于满足跳跃条件的那些反应是准确的。我们根据跃迁条件将物种和反应进行自适应划分,将化学反应网络的随机混合近似方法制定为两类,一类通过CME进行数值求解,另一类通过LNA求解。飞跃标准比基于人口阈值的划分更为通用,该方法可以与CME的任何数值解决方案结合使用。然后,我们使用混合模型导出随机演化逻辑(SEL)的快速近似模型检查算法。在一些案例研究上的实验评估表明,该技术能够为一类大型系统提供准确的随机特性,尤其是那些具有动态刚度的系统,从而在显着改善计算时间的同时仍保持了可扩展性。

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