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Automatic Detection and Tracking of Animal Sperm Cells in Microscopy Images

机译:显微镜图像中动物精子细胞的自动检测和跟踪

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Sperm tracking-and-analysis is one of the interesting topics in biological research and reproductive medicine, as it helps to assess the quality of the sperm for the male infertility. Computer-Assisted Sperm Analysis (CASA) systems provide a rapid and automated assessment of the parameters of sperm motion, together with improved standardization and quality control. In this paper, we propose a method to detect and track animal sperms automatically. First, we detect the sperms in the first frame of all the sequences using a bag-of-words approach and SVM classifier. Then, the detected sperm cells are tracked in the rest of all sequences using mean-shift. The proposed algorithm is evaluated on three videos in our datasets which have sperms as ground truth. The experimental results show that our method achieves a precision of 0.94, 0.93 and 0.96, and are call of 0.96, 0.92, and 0.97 for the three videos respectively in terms of sperm detection. RMSE (Root mean square error) is calculated to evaluate our results in terms of sperms tracking. The results show that we achieve high performance with RMSE of 8.06, 9.01, and 7.09 pixels for three different videos.
机译:精子跟踪和分析是生物学研究和生殖医学中有趣的主题之一,因为它有助于评估男性不育症的精子质量。计算机辅助精子分析(CASA)系统提供了对精子运动参数的快速,自动评估,以及改进的标准化和质量控制。在本文中,我们提出了一种自动检测和跟踪动物精子的方法。首先,我们使用词袋方法和SVM分类器检测所有序列第一帧中的精子。然后,使用均值漂移在所有序列的其余部分中跟踪检测到的精子细胞。在我们的数据集中,以精子为基础的三个视频对提出的算法进行了评估。实验结果表明,我们的方法达到了0.94、0.93和0.96的精度,就精子检测而言,三个视频的检出率分别为0.96、0.92和0.97。计算RMSE(均方根误差)以评估我们的精子追踪结果。结果表明,对于三个不同的视频,RMSE分别为8.06、9.01和7.09像素,可实现高性能。

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