We develop cache and energy efficient algorithms to align very long sequences. These algorithms were evaluated experimentally on a single node of the IBM Blue Gene/Q. We were able to reduce the run time of the classical Myers and Miller linear space alignment algorithm by up to 43%; energy consumption was reduced by up to 45% on our test data.
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机译：我们开发了缓存和节能算法来对齐很长的序列。这些算法在IBM Blue Gene / Q的单个节点上进行了实验评估。我们能够将经典Myers和Miller线性空间对齐算法的运行时间减少多达43％;根据我们的测试数据，能耗降低了多达45％。
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