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Common motifs in scientific workflows: An empirical analysis

机译:科学工作流程中的常见主题:实证分析

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While workflow technology has gained momentum in the last decade as a means for specifying and enacting computational experiments in modern science, reusing and repurposing existing workflows to build new scientific experiments is still a daunting task. This is partly due to the difficulty that scientists experience when attempting to understand existing workflows, which contain several data preparation and adaptation steps in addition to the scientifically significant analysis steps. One way to tackle the understandability problem is through providing abstractions that give a high-level view of activities undertaken within workflows. As a first step towards abstractions, we report in this paper on the results of a manual analysis performed over a set of real-world scientific workflows from Taverna and Wings systems. Our analysis has resulted in a set of scientific workflow motifs that outline i) the kinds of data intensive activities that are observed in workflows (data oriented motifs), and ii) the different manners in which activities are implemented within workflows (workflow oriented motifs). These motifs can be useful to inform workflow designers on the good and bad practices for workflow development, to inform the design of automated tools for the generation of workflow abstractions, etc.
机译:在过去的十年中,虽然工作流技术作为指定和执行现代科学中的计算实验的手段而获得了发展,但重用和重新利用现有的工作流以构建新的科学实验仍然是一项艰巨的任务。这部分是由于科学家在尝试理解现有工作流程时遇到的困难,该工作流程除了具有科学意义的分析步骤外,还包含数个数据准备和适应步骤。解决可理解性问题的一种方法是通过提供抽象方法,以提供对工作流内进行的活动的高层次视图。作为迈向抽象的第一步,我们在本文中报告了在Taverna和Wings系统的一组实际科学工作流上执行的手动分析结果。我们的分析产生了一组科学的工作流程主题,这些主题概述了i)在工作流程中观察到的数据密集型活动的种类(面向数据的主题),以及ii)在工作流程中实施活动的不同方式(面向工作流程的主题) 。这些主题可用于通知工作流设计人员有关工作流开发的好坏做法,通知用于生成工作流抽象的自动化工具等。

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