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Synthesis of Bis-Benzamides as New Amphiphilic α-Helix Mimetics

机译:作为新的两亲性α-Helix模拟物合成双苯甲酰胺

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α-Helices are one of the most commonly found protein secondary structures and often play a vital role in mediating protein-protein interactions. However, helical peptide segments are prone to be damaged by entropy effect when taken out of proteins, and fall in to random coil or other structure [1]. Several approaches have been developed in order to stabilize a-helices in short peptides, such as lactam, salt and disulfide bridge formations between the i and i+4 positions of a helix [2]. An alternative approach is to achieve small molecules that mimic a-helices by using rigid and pre-organized scaffolds including terphenyls [3], trispyridylamides [4], polycyclic ethers [5], pyridazines [6], and trisbenzamides [7]. These a-helix mimetics focus on presenting only one side of a helix that comprises of the side chains of amino acids found at the i, i+3 (or i+4), and i+7 positions. On the contrary, a-helix mimetics that have a capability to represent two opposing helical faces have not been reported yet. Hence, we report a new bisbenzamide scaffold that can place four side chain functional groups, two found at the i and i+7 positions on one helical face; and the other two from the i+2 and i+5 positions on the opposite side (Figure 1). The spatial arrangement of the four substituents was fixed by two hydrogen bonds between a benzamide proton and two adjacent alkoxy groups that promote high structural rigidity and superior a-helix mimicry.
机译:α-螺旋是最常见的蛋白质二级结构之一,并且通常在介导蛋白质 - 蛋白质相互作用方面发挥重要作用。然而,当从蛋白质中取出时,螺旋肽段易于受到熵效果的损坏,并落入随机线圈或其他结构[1]。已经开发了几种方法,以便在螺旋[2]的I和I + 4位之间的内酰胺,盐和二硫桥形成中的短肽,例如内酰胺,盐和二硫键形成。另一种方法是通过使用刚性和预先组织的支架来实现模拟A-螺旋的小分子,包括三苯基[3],三吡啶基酰胺[4],多环醚[5],哒嗪[6]和三苯甲酰胺[7]。这些A-Helix模拟物的重点是仅呈现螺旋的一侧,该螺旋的侧链包括在I,I + 3(或I + 4)和I + 7位置发现的氨基酸的侧链。相反,尚未报告具有代表两个相对螺旋面的能力的A-Helix模拟物。因此,我们报告了一种新的双苯甲酰胺支架,可以放置四个侧链官能团,在I和I + 7位上发现一个螺旋面;另一两个来自I + 2和I + 5位的相对侧的位置(图1)。四种取代基的空间布置通过苯甲酰胺质子和两个相邻的烷氧基之间的两个氢键固定,该烷氧基促进高结构刚性和优异的A螺旋模拟物。

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