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首页> 外文期刊>Journal of chemical theory and computation: JCTC >Configuration-Sampling-Based Surrogate Models for Rapid Parameterization of Non-Bonded Interactions
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Configuration-Sampling-Based Surrogate Models for Rapid Parameterization of Non-Bonded Interactions

机译:基于配置 - 基于采样的代理模型,用于快速参数化非粘合交互

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摘要

In this study, we present an approach for rapid force field parameterization and uncertainty quantification of the non-bonded interaction parameters for classical force fields. The accuracy of most thermophysical properties, and especially vapor-liquid equilibria (VLE), obtained from molecular simulation depends strongly on the non-bonded interactions. Traditionally, non-bonded interactions are parameterized to agree with macroscopic properties by performing large amounts of direct molecular simulation. Due to the computational cost of molecular simulation, surrogate models (i.e., efficient models that approximate direct molecular simulation results) are an essential tool for high-dimensional parameterization and uncertainty quantification of non-bonded interactions. The present study compares two different configuration-sampling-based surrogate models, namely, Multistate Bennett Acceptance Ratio (MBAR) and Pair Correlation Function Rescaling (PCFR). MBAR and PCFR are coupled with the Isothermal Isochoric (ITIC) thermodynamic integration method for estimating vapor-liquid saturation properties. We find that MBAR and PCFR are complementary in their roles. Specifically, PCFR is preferred when exploring distant regions of the parameter space while MBAR is better in the local domain.
机译:在这项研究中,我们提出了一种快速力场参数化的方法,以及古典力场的非粘结交互参数的不确定性量化。从分子模拟中获得的大多数热物理性质,特别是蒸气液平衡(VLE)的准确性依赖于非键合相互作用。传统上,通过进行大量直接分子模拟来参数化非键合相互作用以与宏观性质一致。由于分子模拟的计算成本,替代模型(即,近似直接分子模拟结果的高效模型)是用于高维参数化和非粘结相互作用的不确定性量化的基本工具。本研究比较了两种不同的配置采样的代理模型,即多态Bennett接受比(MBar)和对相关函数重新扫描(PCFR)。 MBAR和PCFR与等温等离子(ITIC)热力学积分方法耦合,用于估计蒸汽饱和度特性。我们发现MBAR和PCFR在其角色中是互补的。具体地,当MB处在本地域中探索参数空间的远处区域时,PCFR是优选的。

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