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An N-stage Cascade of Phosphorylation Cycles as an Insulation Device for Synthetic Biological Circuits

机译:N阶段磷酸化循环作为合成生物电路的绝缘装置

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摘要

Single phosphorylation cycles have been found to have insulation device abilities, that is, they attenuate the effect of retroactivity applied by downstream systems and hence facilitate modular design in synthetic biology. It was recently discovered that this retroactivity attenuation property comes at the expense of an increased retroactivity to the input of the insulation device, wherein the device slows down the signal it receives from its upstream system. In this paper, we demonstrate that insulation devices built of cascaded phosphorylation cycles can break this tradeoff allowing to attenuate the retroactivity applied by downstream systems while keeping a small retroactivity to the input. In particular, we show that there is an optimal number of cycles that maximally extends the linear operating region of the insulation device while keeping the desired retroactivity properties, when a common phosphatase is used. These findings provide optimal design strategies of insulation devices for synthetic biology applications.
机译:已经发现单个磷酸化循环具有绝缘装置的能力,也就是说,它们减弱了下游系统施加的追溯性的影响,因此促进了合成生物学中的模块化设计。最近发现,这种追溯力衰减特性是以增加对绝缘装置的输入的追溯力为代价的,其中该装置减慢了它从其上游系统接收的信号。在本文中,我们证明了由级联的磷酸化循环构建的绝缘设备可以打破这种折衷,从而可以减弱下游系统施加的追溯性,同时保持对输入的较小追溯性。特别地,我们表明,当使用普通的磷酸酶时,有一个最佳的循环数可以最大程度地扩展绝缘装置的线性工作区域,同时保持所需的追溯特性。这些发现为合成生物学应用提供了绝热设备的最佳设计策略。

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