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Searching Ontologies Based on Content: Experiments in the Biomedical Domain

机译:基于内容搜索本体:生物医学领域的实验

摘要

As more ontologies become publicly available, finding the "right" ontologies becomes much harder. In this paper, we address the problem of ontology search: finding a collection of ontologies from an ontology repository that are relevant to the user's query. In particular, we look at the case when users search for ontologies relevant to a particular topic (e.g., an ontology about anatomy). Ontologies that are most relevant to such query often do not have the query term in the names of their concepts (e.g., the Foundational Model of Anatomy ontology does not have the term "anatomy" in any of its concepts' names). Thus, we present a new ontology-search technique that helps users in these types of searches. When looking for ontologies on a particular topic (e.g., anatomy), we retrieve from the Web a collection of terms that represent the given domain (e.g., terms such as body, brain, skin, etc. for anatomy). We then use these terms to expand the user query. We evaluate our algorithm on queries for topics in the biomedical domain against a repository of biomedical ontologies. We use the results obtained from experts in the biomedical-ontology domain as the gold standard. Our experiments demonstrate that using our method for query expansion improves retrieval results by a 113%, compared to the tools that search only for the user query terms and consider only class and property names (like Swoogle). We show 43% improvement for the case where not only class and property names but also property values are taken into account.
机译:随着越来越多的本体公开可用,找到“正确的”本体变得越来越困难。在本文中,我们解决了本体搜索的问题:从本体存储库中找到与用户查询相关的本体集合。特别是,我们研究了用户搜索与特定主题相关的本体(例如,有关解剖的本体)的情况。与此类查询最相关的本体通常在其概念名称中没有查询词(例如,“解剖学本体模型的基础模型”在其任何概念名称中均没有术语“解剖”)。因此,我们提出了一种新的本体搜索技术,可以帮助用户进行这些类型的搜索。当寻找关于特定主题(例如,解剖学)的本体时,我们从网络上检索表示给定领域的术语的集合(例如,诸如身体,大脑,皮肤等的术语,用于解剖学)。然后,我们使用这些术语来扩展用户查询。我们根据生物医学本体库对生物医学领域中的主题进行查询来评估我们的算法。我们使用从生物医学肿瘤学领域的专家那里获得的结果作为金标准。我们的实验表明,与仅搜索用户查询词并仅考虑类和属性名称(如Swoogle)的工具相比,使用我们的方法进行查询扩展可将检索结果提高113%。对于不仅考虑类和属性名称而且考虑属性值的情况,我们显示出43%的改进。

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