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Semantic Integration of Cervical Cancer Data Repositories to Facilitate Multicenter Association Studies: The ASSIST Approach

机译:宫颈癌数据库的语义整合促进多中心关联研究:assIsT方法

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摘要

The current work addresses the unifi cation of Electronic Health Records related to cervical cancer into a single medical knowledge source, in the context of the EU-funded ASSIST research project. The project aims to facilitate the research for cervical precancer and cancer through a system that virtually unifi es multiple patient record repositories, physically located in different medical centers/hospitals, thus, increasing fl exibility by allowing the formation of study groups “on demand” and by recycling patient records in new studies. To this end, ASSIST uses semantic technologies to translate all medical entities (such as patient examination results, history, habits, genetic profi le) and represent them in a common form, encoded in the ASSIST Cervical Cancer Ontology. The current paper presents the knowledge elicitation approach followed, towards the defi nition and representation of the disease’s medical concepts and rules that constitute the basis for the ASSIST Cervical Cancer Ontology. The proposed approach constitutes a paradigm for semantic integration of heterogeneous clinical data that may be applicable to other biomedical application domains.
机译:当前的工作是在欧盟资助的ASSIST研究项目的背景下,将与宫颈癌相关的电子健康记录统一为一个医学知识来源。该项目旨在通过一个实际上统一多个物理上位于不同医疗中心/医院的患者病历库的系统,促进宫颈癌和癌症的研究,从而通过允许“按需”组建研究小组来提高灵活性。通过在新研究中回收患者记录。为此,ASSIST使用语义技术来翻译所有医学实体(例如患者检查结果,病史,习惯,遗传特征),并以通用形式表示它们,并以ASSIST宫颈癌本体论进行编码。本论文介绍了遵循的知识启发方法,以对疾病的医学概念和规则进行定义和表示,这些概念和规则构成ASSIST宫颈癌本体论的基础。所提出的方法构成了可适用于其他生物医学应用领域的异构临床数据语义集成的范例。

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