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A method to construct gene regulatory networks to estimate and calculate time delays

机译:一种构建基因调控网络以估计和计算时间延迟的方法

摘要

In general, the motive of this research is to infer gene regulatory network in order to clarify the basis consequences of biological process at the molecular level. Time course gene expression profiling dataset has been widely used in basic biological research, especially in transcription regulation studies since the microarray dataset is a short time course gene expression dataset and have lots of errors, missing value, and noise. In this research, R library is implemented in this method to construct gene regulatory which aims to estimate and calculate the time delays between genes and transcription factor. Time delay is the parameters of the modeled time delay linear regression models and a time lag during gene expression change of the regulator genes toward target gene expression. The constructed gene regulatory network provided information of time delays between expression change in regulator genes and its target gene which can be applied to investigate important time-related biological process in cells. The result of time delays and regulation patterns in gene regulatory network may contribute into biological research such as cell development, cell cycle, and cell differentiation in any of living cells.
机译:通常,这项研究的动机是推断基因调控网络,以便在分子水平上阐明生物过程的基础结果。时程基因表达谱数据集已广泛用于基础生物学研究中,尤其是在转录调控研究中,因为微阵列数据集是短时程基因表达数据集,并且存在许多错误,缺失值和噪音。在这项研究中,R库是用这种方法实现的,目的是构建基因调控因子,目的是估计和计算基因与转录因子之间的时间延迟。时间延迟是建模的时间延迟线性回归模型的参数,以及调节基因向目标基因表达的基因表达变化期间的时间滞后。构建的基因调控网络提供了调控基因与其靶基因表达变化之间的时间延迟信息,可用于研究细胞中重要的与时间相关的生物学过程。基因调控网络中时间延迟和调控模式的结果可能有助于生物学研究,例如活细胞中的细胞发育,细胞周期和细胞分化。

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  • 年度 2013
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  • 正文语种 {"code":"en","name":"English","id":9}
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