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1 GeneTerrain: Visual Exploration of Differential Gene Expression Profiles Organized in Native Biomolecular Interaction Networks

机译：1 GeneTerrain：在天然生物分子相互作用网络中组织的差异基因表达谱的视觉探索

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Qian You; Shiaofen Fang; Jake Yue Chen;
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年度 2014
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1. GeneTerrain: Visual exploration of differential gene expression profiles organized in native biomolecular interaction networks [J] . Qian You, Shiaofen Fang, Jake Yue Chen Information visualization . 2010 ,第1期

机译：GeneTerrain：视觉探索天然生物分子相互作用网络中组织的差异基因表达谱
2. Alternative exon usage creates novel transcript variants of tumor suppressor SHREW-1 gene with differential tissue expression profile Alternative exon usage creates novel transcript variants of tumor suppressor SHREW-1 gene with differential tissue expression profile Alternative exon usage creates novel transcript variants of tumor suppressor SHREW-1 gene with differential tissue expression profile [J] . Petra A. B. Klemmt, Knut Engels, Eduard Resch, Biology Open . 2016 ,第11期

机译：替代性外显子用法可产生具有不同组织表达特征的抑癌基因SHREW-1基因的新转录物变体替代性外显子用法可产生具有不同组织表达特征的抑癌基因SHREW-1基因的新转录物变体替代性外显子用法可产生肿瘤抑制物SHREW-1的新型转录物变体1个具有不同组织表达谱的基因
3. Alternative exon usage creates novel transcript variants of tumor suppressor SHREW-1 gene with differential tissue expression profile Alternative exon usage creates novel transcript variants of tumor suppressor SHREW-1 gene with differential tissue expression profile Alternative exon usage creates novel transcript variants of tumor suppressor SHREW-1 gene with differential tissue expression profile [J] . Petra A. B. Klemmt, Knut Engels, Eduard Resch, Biology Open . 2016 ,第11期

机译：替代性外显子用法可产生具有不同组织表达特征的抑癌基因SHREW-1基因的新转录物变体替代性外显子用法可产生具有不同组织表达特征的抑癌基因SHREW-1基因的新转录物变体替代性外显子用法可产生肿瘤抑制物SHREW-1的新型转录物变体1个具有不同组织表达谱的基因
4. Advanced statistical analysis of RNA-seq differential gene expression profiles of animal gene-environment interactions [C] . Kelsey Caetano-Anollés, Scott Nixon, Sanjibita Mishra, International Conference on Bioinformatics and Computational Biology . 2014

机译：动物基因环境相互作用RNA-SEQ差异基因表达谱的高级统计分析
5. Statistical methods for gene selection using differential gene expression and building gene co-expression networks. [D] . Luo, Zhaoyu. 2009

机译：使用差异基因表达和构建基因共表达网络进行基因选择的统计方法。
6. Integrating Genome-Wide Association Studies and Gene Expression Profiles With Chemical-Genes Interaction Networks to Identify Chemicals Associated With Colorectal Cancer [O] . Xinyue Tan, Hanmin Tang, Liuyun Gong, 2020

机译：将全基因组关联研究和基因表达谱与化学基因相互作用网络相结合以鉴定与大肠癌相关的化学物质
7. Figure 1: Example of visualization of long range contacts for: (A) regions, here enhancer-promoter contacts, for two 10 kb resolution Hi-C maps from human Fetal Brain cells. Contacts were calculated up to 30 bins distance each way from the point of interest. Top to bottom: a Jbrowse (Skinner et al., 2009) screenshot with genes and interaction profile representation (points of interest in green, their contact predictions in yellow); HiCEnterprise interaction profile plot with intensities (weighted by distance) and −log10 of FDR corrected p-values (q-values) with a threshold set at 0.01. (B) TADs, here HiCEnterprise visualization for 150 kb resolution Hi-C map of 17th chromosome from HUVEC. Left upper trianle: original Hi-C map contact frequencies; right lower triangle: −log10 of q-values of the interdomain interactions calculated with hypergeometric distribution. [O] . -1

机译：图1：用于：（a）区域的长距离触点的可视化示例，这里增强了来自人胎儿脑细胞的两个10kb分辨率的Hi-C地图。从兴趣点计算联系人高达30个距离距离。顶部到底：jbrowse（Skinner等，2009）截图，具有基因和互动曲线表示（绿色兴趣点，它们的黄色接触预测）; HICENTERPLISE交互配置曲线图具有强度（由距离加权）和FDR校正的P值（Q值）的-LOG10，其阈值设置为0.01。（b）TADS，这里是来自Huvec的第17次染色体的150 KB分辨率Hi-C地图的Hicenterprise可视化。左上三角：原版Hi-C地图接触频率;右下三角形：跨度相互作用的Q值的-log10计算，使用超几何分布计算。

1 GeneTerrain: Visual Exploration of Differential Gene Expression Profiles Organized in Native Biomolecular Interaction Networks

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