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Saddle-shaped macrocycle distortion and symmetry decrease in cobalt (II) meso-tetraphenylporphyrin: structure of a dichloromethane solvate and DFT calculations

机译:钴(II)内四苯基卟啉的鞍形大环畸变和对称性降低:二氯甲烷溶剂化物的结构和DFT计算

摘要

Many studies about porphyrins have emerged in recent years, including studies using porphyrins as building blocks for supramolecular assemblies. Understanding new solid state forms of porphyrins and the elucidation of their structures can have remarkable benefits for nanoscience and synthetic biology. In this study, a new pseudopolymorph of cobalt (II) meso-tetraphenylporphyrin, (CoTPP), was synthesized in a known one-pot reaction, rather than using many-step conventional methods, was isolated and was characterized for the first time by low-temperature single crystal X-ray diffraction. It is a nonstoichiometric solvate assembled into dichloromethane channels. The most striking feature of this structure is the conformation adopted by the porphyrin macrocycle. In contrast to the non-solvated form of CoTPP that exhibits a ruffled core distortion and crystallizes in the tetragonal space group I-42d, this solvated form has been crystallized in the triclinic space group Pī and shows a distinct saddle-shaped macrocycle distortion. In the triclinic form, the conformation of one of the four phenyl rings is remarkably different from the others. A potential energy surface scan of the torsional angles around the bonds between this phenyl moiety and the macrocycle of CoTPP in both the non-solvated and the solvate forms demonstrates that the saddle-shaped macrocycle distortion depends on the unusual phenyl conformation. The distortion is responsible for the symmetry decrease in the channel solvate form, causing a loss of the 4-fold rotoinversion axis observed in the non-solvated tetragonal phase, which has identical phenyl conformations.
机译:近年来,出现了许多关于卟啉的研究,包括使用卟啉作为超分子组装的基础材料的研究。理解卟啉的新固态形式及其结构的阐明对纳米科学和合成生物学具有显着的益处。在这项研究中,通过已知的一锅法反应合成了钴(II​​)介孔四苯基卟啉(CoTPP)的一种新的假多晶型物,而不是使用多步常规方法进行了分离,并首次通过低通量表征高温单晶X射线衍射。它是组装在二氯甲烷通道中的非化学计量溶剂化物。该结构最显着的特征是卟啉大环所采用的构象。与非溶剂化形式的CoTPP表现出皱纹状的核畸变并在I-42d四边形空间群中结晶相比,该溶剂化形式在三斜空间群Pī中已结晶并显示出明显的鞍形大环畸变。在三斜晶形式中,四个苯环之一的构象与其他苯环显着不同。对在非溶剂化物和溶剂化物形式中此苯基部分与CoTPP大环之间的键周围的扭转角进行的势能面扫描表明,鞍形大环畸变取决于异常的苯基构象。畸变导致通道溶剂化物形式的对称性降低,导致在具有相同苯基构象的非溶剂化四方相中观察到的4倍旋转反转轴的损失。

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