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Text Mining and Similarity Search Using Extended Tri-gram Algorithm in the Reference Based Local Repository Dataset

机译：基于引用的本地存储库数据集中使用扩展Tri-gram算法的文本挖掘和相似性搜索

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Kumar Ranjeet; Tripathi R.C.;
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年度 2015
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1. Text Mining and Similarity Search Using Extended Tri-gram Algorithm in the Reference Based Local Repository Dataset [J] . Ranjeet Kumar, R.C. Tripathi Procedia Computer Science . 2015,第1期

机译：基于引用的本地存储库数据集中使用扩展Tri-gram算法的文本挖掘和相似性搜索
2. Text Mining and Similarity Search Using Extended Tri-gram Algorithm in the Reference Based Local Repository Dataset [J] . Ranjeet Kumar, R.C. Tripathi Procedia Computer Science . 2015,第1期

机译：基于引用的本地存储库数据集中使用扩展Tri-gram算法的文本挖掘和相似性搜索
3. High-Dimensional Text Datasets Clustering Algorithm Based on Cuckoo Search and Latent Semantic Indexing [J] . Saida Ishak Boushaki, Nadjet Kamel, Omar Bendjeghaba Journal of information & knowledge management . 2018,第3期

机译：基于Cuckoo搜索和潜在语义索引的高维文本数据集聚类算法
4. Text Similarity Using Google Tri-grams [C] . Aminul Islam, Evangelos Milios, Vlado Keselj Advances in artificial intelligence. . 2012

机译：使用Google Tri-gram的文本相似性
5. Hashing Based Similarity Search over Massive Datasets [D] . Li, Jinfeng. 2018

机译：基于哈希的大规模数据集相似度搜索
6. COVID19 Drug Repository: text-mining the literature in search of putative COVID19 therapeutics [O] . Dmitry Tworowski, Alessandro Gorohovski, Sumit Mukherjee, 2021

机译：Covid19药物存储库：文本挖掘文献用于寻找推定的Covid19治疗方法
7. Figure 4: (A) One conserved sequence, which occurs 79 times in 46,264 binding site peaks from the ChIP-seq data-set. The mutation profile of this conserved sequence is illustrated, where ’_ ’ indicates this base is unchanged; DEL indicates this base is lost; INS X indicates a new base X is inserted in front of this base. (B) Several repeated elements patterns are listed. (C) In the first column, the top five DNA motifs, mined by meme-chip tools (Machanick Bailey, 2011) are illustrated. The resemblant conserved sequences, found by the CFSP algorithm are listed in the second column. In the third column, the position-specific scoring matrices, which are transformed from mutational information are listed. The similarity between meme motif and resemblant conserved sequence with PSSM format was calculated via a stamp motif comparison tool (Mahony Benos, 2007). The E-values for the similarity of those pairs is displayed in the fourth column. (D) One motif is selected in each group clustered by gkmsvm descriptors, and the corresponding motif found by the CFSP algorithm is listed below. (E) There are additional datasets (File No: ENCFF100GRL, ENCFF616IRT, ENCFF870CER, Target: SREBF1) collected from https://www.encodeproject.org. The top two motifs are selected in each file using meme tools, and the corresponding motifs found by our algorithm are listed below. [O] . -1

机译：图4：（a）一种保守序列，其发生在芯片-SEQ数据集中的46,264个结合位点峰值中的79倍。说明了这种保守序列的突变分布，其中'_'表示该碱度不变; del表示此基础丢失; INS X表示新的基础X插入此基础前面。（b）列出了几种重复的元素模式。（c）在第一栏中，示出了由MEME芯片工具（Machanick＆Bailey，2011）开采的前五个DNA主题。由CFSP算法发现的相应保守序列列于第二列中。在第三列中，列出了从突变信息转换的特定位置的评分矩阵。 MEME主题与PSSM格式的相似性与PSSM格式之间的相似性通过邮票图章比较工具（Mahony＆Benos，2007）计算。这些对相似性的电子值显示在第四列中。（d）在由GKMSVM描述符聚集的每个组中选择了一个图案，下面列出了CFSP算法的相应主题。（e）从https://www.encodeproject.org收集的，有附加数据集（文件no：cernff100grl，cenf616irl，conf8.20cer，target：srebf1）。使用MEME工具在每个文件中选择前两个图案，并且我们的算法发现的相应主题如下所示。

Text Mining and Similarity Search Using Extended Tri-gram Algorithm in the Reference Based Local Repository Dataset

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