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A KIM-compliant potfit for fitting sloppy interatomic potentials : application to the EDIP model for silicon

机译:符合KIM的适合拟合杂原子间电位的电位器:在硅EDIP模型中的应用

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摘要

Fitted interatomic potentials are widely used in atomistic simulations thanks to their ability to compute the energy and forces on atoms quickly. However, the simulation results crucially depend on the quality of the potential being used. Force matching is a method aimed at constructing reliable and transferable interatomic potentials by matching the forces computed by the potential as closely as possible, with those obtained from first principles calculations. The potfit program is an implementation of the force-matching method that optimizes the potential parameters using a global minimization algorithm followed by a local minimization polish. We extended potfit in two ways. First, we adapted the code to be compliant with the KIM Application Programming Interface (API) standard (part of the Knowledgebase of Interatomic Models Project). This makes it possible to use potfit to fit many KIM potential models, not just those prebuilt into the potfit code. Second, we incorporated the geodesic Levenberg–Marquardt (LM) minimization algorithm into potfit as a new local minimization algorithm. The extended potfit was tested by generating a training set using the KIM Environment-Dependent Interatomic Potential (EDIP) model for silicon and using potfit to recover the potential parameters from different initial guesses. The results show that EDIP is a “sloppy model” in the sense that its predictions are insensitive to some of its parameters, which makes fitting more difficult. We find that the geodesic LM algorithm is particularly efficient for this case. The extended potfit code is the first step in developing a KIM-based fitting framework for interatomic potentials for bulk and two-dimensional materials. The code is available for download via https://www.potfit.net.
机译:拟合的原子间势因其能够快速计算原子上的能量和力的能力而广泛用于原子模拟中。但是,仿真结果主要取决于所使用电位的质量。力匹配是一种旨在通过将由电势计算出的力与从第一原理计算中获得的力尽可能紧密地匹配来构造可靠且可转移的原子间电势的方法。 potfit程序是力匹配方法的实现,该方法使用全局最小化算法和局部最小化抛光来优化潜在参数。我们通过两种方式扩展了potfit。首先,我们将代码修改为符合KIM应用程序编程接口(API)标准(原子间模型项目知识库的一部分)。这使得使用potfit来适应许多KIM潜在模型成为可能,而不仅仅是那些预先内置在potfit代码中的模型。其次,我们将测地线Levenberg-Marquardt(LM)最小化算法整合到potfit中,作为一种新的局部最小化算法。通过使用针对硅的KIM环境相关原子间电势(EDIP)模型生成训练集并使用potfit从不同的初始猜测中恢复电势参数,来测试扩展的potfit。结果表明,EDIP是一个“草率模型”,因为它的预测对其某些参数不敏感,这使拟合更加困难。我们发现测地线LM算法在这种情况下特别有效。扩展的potfit代码是开发用于散装和二维材料的原子间势的基于KIM的拟合框架的第一步。该代码可通过https://www.potfit.net下载。

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