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Estimation of Kinetic Parameters From List-Mode Data Using an Indirect Approach

机译:使用间接方法从列表模式数据估算动力学参数

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摘要

This dissertation explores the possibility of using an imaging approach to model classical pharmacokinetic (PK) problems. The kinetic parameters which describe the uptake rates of a drug within a biological system, are parameters of interest. Knowledge of the drug uptake in a system is useful in expediting the drug development process, as well as providing a dosage regimen for patients. Traditionally, the uptake rate of a drug in a system is obtained via sampling the concentration of the drug in a central compartment, usually the blood, and fitting the data to a curve. In a system consisting of multiple compartments, the number of kinetic parameters is proportional to the number of compartments, and in classical PK experiments, the number of identifiable parameters is less than the total number of parameters. Using an imaging approach to model classical PK problems, the support region of each compartment within the system will be exactly known, and all the kinetic parameters are uniquely identifiable. To solve for the kinetic parameters, an indirect approach, which is a two part process, was used. First the compartmental activity was obtained from data, and next the kinetic parameters were estimated. The novel aspect of the research is using listmode data to obtain the activity curves from a system as opposed to a traditional binned approach. Using techniques from information theoretic learning, particularly kernel density estimation, a non-parametric probability density function for the voltage outputs on each photo-multiplier tube, for each event, was generated on the fly, which was used in a least squares optimization routine to estimate the compartmental activity. The estimability of the activity curves for varying noise levels as well as time sample densities were explored. Once an estimate for the activity was obtained, the kinetic parameters were obtained using multiple cost functions, and the compared to each other using the mean squared error as the figure of merit.
机译:本文探讨了使用成像方法对经典药代动力学(PK)问题进行建模的可能性。描述生物学系统内药物吸收速率的动力学参数是关注的参数。系统中药物吸收的知识可用于加快药物开发过程,并为患者提供给药方案。传统上,系统中药物的吸收率是通过对中央隔室(通常是血液)中的药物浓度进行采样并将数据拟合为曲线来获得的。在由多个隔室组成的系统中,动力学参数的数量与隔室的数量成比例,而在经典PK实验中,可识别参数的数量小于参数的总数。使用成像方法来建模经典PK问题,系统内每个隔室的支撑区域将被精确知道,并且所有动力学参数都是唯一可识别的。为了求解动力学参数,使用了一种分为两部分的间接方法。首先从数据中获得隔室活性,然后评估动力学参数。该研究的新颖之处在于使用列表模式数据从系统中获取活动曲线,这与传统的分箱方法不同。使用信息理论学习中的技术,特别是核密度估计,针对每个事件,动态生成了每个光电倍增管上电压输出的非参数概率密度函数,该函数在最小二乘优化例程中用于估计隔室活动。探索了变化的噪声水平以及时间样本密度下活动曲线的可估计性。一旦获得了活性的估计值,就可以使用多个成本函数获得动力学参数,并使用均方误差作为品质因数相互比较。

著录项

  • 作者

    Ortiz Joseph Christian;

  • 作者单位
  • 年度 2016
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  • 原文格式 PDF
  • 正文语种 en_US
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