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A transcriptomics resource for wheat functional genomics

机译:小麦功能基因组学的转录组学资源

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摘要

Grain development, germination and plant development under abiotic stresses are areas of biology that are of considerable interest to the cereal community. Within the Investigating Gene Function programme we have produced the resources required to investigate alterations in the transcriptome of hexaploid wheat during these developmental processes. We have single pass sequenced the cDNAs of between 700 and 1300 randomly picked clones from each of 35 cDNA libraries representing highly specific stages of grain and plant development. Annotated sequencing results have been stored in a publicly accessible, online database at http://www.cerealsdb.uk.net. Each of the tissue stages used has also been photographed in detail, resulting in a collection of high-quality micrograph images detailing wheat grain development. These images have been collated and annotated in order to produce a web site focused on wheat development (http://www.wheatbp.net/). We have also produced high-density microarrays of a publicly available wheat unigene set based on the 35 cDNA libraries and have completed a number of microarray experiments which validate their quality.
机译:非生物胁迫下的谷物发育,发芽和植物发育是生物学领域,是谷物界相当感兴趣的领域。在“研究基因功能”程序中,我们提供了调查这些发育过程中六倍体小麦转录组变化所需的资源。我们对35个cDNA文库中的700个和1300个随机选择的克隆的cDNA进行了单次测序,这些克隆代表了谷物和植物发育的高度特定阶段。带注释的测序结果已存储在http://www.cerealsdb.uk.net上的公共可访问在线数据库中。还对每个使用的组织阶段进行了详细拍照,从而收集了详细描述小麦籽粒发育的高质量显微图像。对这些图像进行了整理和注释,以创建一个专注于小麦发育的网站(http://www.wheatbp.net/)。我们还基于35个cDNA文库生产了可公开获得的小麦unigene集的高密度微阵列,并且已经完成了许多验证其质量的微阵列实验。

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