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Reconstructing the Free-Energy Landscape of a Mechanically Unfolded Model Protein

机译:重建机械展开的模型蛋白的自由能景观

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摘要

The equilibrium free energy landscape of an off-lattice model protein as a function of an internal (reaction) coordinate is reconstructed from out-of-equilibrium mechanical unfolding manipulations. This task is accomplished via two independent methods: by employing an extended version of the Jarzynski equality (EJE) and the protein inherent structures (ISs). In a range of temperatures around the ``folding transitionu27u27 we find a good quantitative agreement between the free energies obtained via EJE and IS approaches. This indicates that the two methodologies are consistent and able to reproduce equilibrium properties of the examined system. Moreover, for the studied model the structural transitions induced by pulling can be related to thermodynamical aspects of folding.
机译:晶格外模型蛋白质的平衡自由能态作为内部(反应)坐标的函数,是通过失衡的机械展开操作重建的。此任务通过两种独立的方法完成:采用Jarzynski等式(EJE)的扩展版本和蛋白质固有结构(ISs)。在``折叠转变''附近的温度范围内,我们发现通过EJE和IS方法获得的自由能之间存在良好的定量一致性。这表明这两种方法是一致的,并且能够再现所检查系统的平衡特性。此外,对于所研究的模型,由牵拉引起的结构转变可能与折叠的热力学方面有关。

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