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Multiple sources of contamination in samples from patients reported to have XMRV infection

机译:报告患有XMRV感染的患者样品中的多种污染源

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摘要

Xenotropic murine leukemia virus (MLV)-related retrovirus (XMRV) was reported to be associated with prostate cancer by Urisman, et al. in 2006 and chronic fatigue syndrome (CFS) by Lombardi, et al. in 2009. To investigate this association, we independently evaluated plasma samples from 4 patients with CFS reported by Lombardi, et al. to have XMRV infection and from 5 healthy controls reported to be XMRV uninfected. We also analyzed viral sequences obtained from supernatants of cell cultures found to contain XMRV after coculture with 9 clinical samples from 8 patients. A qPCR assay capable of distinguishing XMRV from endogenous MLVs showed that the viral sequences detected in the CFS patient plasma behaved like endogenous MLVs and not XMRV. Single-genome sequences (N = 89) from CFS patient plasma were indistinguishable from endogenous MLVs found in the mouse genome that are distinct from XMRV. By contrast, XMRV sequences were detected by qPCR in 2 of the 5 plasma samples from healthy controls (sequencing of the qPCR product confirmed XMRV not MLV). Single-genome sequences (N = 234) from the 9 culture supernatants reportedly positive for XMRV were indistinguishable from XMRV sequences obtained from 22Rv1 and XMRV-contaminated 293T cell-lines. These results indicate that MLV DNA detected in the plasma samples from CFS patients evaluated in this study was from contaminating mouse genomic DNA and that XMRV detected in plasma samples from healthy controls and in cultures of patient samples was due to cross-contamination with XMRV (virus or nucleic acid).
机译:据Urisman等报道,异种鼠白血病病毒(MLV)相关的逆转录病毒(XMRV)与前列腺癌有关。在2006年,以及Lombardi等人的慢性疲劳综合症(CFS)。为了研究这种关系,我们独立评估了Lombardi等报道的4例CFS患者的血浆样本。感染XMRV,并从5个健康对照中报告未感染XMRV。我们还分析了与8个患者的9个临床样品共培养后从含有XMRV的细胞培养上清液中获得的病毒序列。能够区分XMRV和内源性MLV的qPCR分析表明,在CFS患者血浆中检测到的病毒序列表现得像内源性MLV而不是XMRV。来自CFS患者血浆的单基因组序列(N = 89)与在小鼠基因组中发现的与XMRV不同的内源性MLV没有区别。相比之下,通过qPCR在健康对照的5个血浆样品中的2个中检测到XMRV序列(qPCR产物的测序证实XMRV不是MLV)。据报道来自9个培养上清液的XMRV阳性的单基因组序列(N = 234)与从22Rv1和XMRV污染的293T细胞系获得的XMRV序列没有区别。这些结果表明,在这项研究中评估的CFS患者血浆样品中检测到的MLV DNA来自污染的小鼠基因组DNA,健康对照血浆样品和患者培养物中检测到的XMRV是由于与XMRV交叉污染(病毒或核酸)。

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