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Semiquantal molecular dynamics simulations of hydrogen-bond dynamics in liquid water using multi-dimensional Gaussian wave packets.

机译:使用多维高斯波包的液态水氢键动力学半量子分子动力学模拟。

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摘要

A semiquantal (SQ) molecular dynamics (MD) simulation method based on an extended Hamiltonian formulation has been developed using multi-dimensional thawed Gaussian wave packets (WPs), and applied to an analysis of hydrogen-bond (H-bond) dynamics in liquid water. A set of Hamilton's equations of motion in an extended phase space, which includes variance-covariance matrix elements as auxiliary coordinates representing anisotropic delocalization of the WPs, is derived from the time-dependent variational principle. The present theory allows us to perform real-time and real-space SQMD simulations and analyze nuclear quantum effects on dynamics in large molecular systems in terms of anisotropic fluctuations of the WPs. Introducing the Liouville operator formalism in the extended phase space, we have also developed an explicit symplectic algorithm for the numerical integration, which can provide greater stability in the long-time SQMD simulations. The application of the present theory to H-bond dynamics in liquid water is carried out under a single-particle approximation in which the variance-covariance matrix and the corresponding canonically conjugate matrix are reduced to block-diagonal structures by neglecting the interparticle correlations. As a result, it is found that the anisotropy of the WPs is indispensable for reproducing the disordered H-bond network compared to the classical counterpart with the use of the potential model providing competing quantum effects between intra- and intermolecular zero-point fluctuations. In addition, the significant WP delocalization along the out-of-plane direction of the jumping hydrogen atom associated with the concerted breaking and forming of H-bonds has been detected in the H-bond exchange mechanism. The relevance of the dynamical WP broadening to the relaxation of H-bond number fluctuations has also been discussed. The present SQ method provides the novel framework for investigating nuclear quantum dynamics in the many-body molecular systems in which the local anisotropic fluctuations of nuclear WPs play an essential role.
机译:使用多维解冻的高斯波包(WPs)开发了基于扩展哈密顿量公式的半量子(SQ)分子动力学(MD)模拟方法,并将其应用于液体中氢键(H键)动力学的分析水。从时间相关变分原理推导了一组扩展相空间中的汉密尔顿运动方程,其中包括方差-协方差矩阵元素作为表示WPs各向异性离域的辅助坐标。本理论使我们能够进行实时和真实空间的SQMD模拟,并根据WPs的各向异性波动来分析核量子对大分子系统动力学的影响。在扩展相空间中引入Liouville算子形式,我们还为数值积分开发了显式辛算法,该算法可在长时间SQMD模拟中提供更大的稳定性。本理论在液态水中氢键动力学的应用是在单粒子近似下进行的,其中通过忽略粒子间的相关性将方差-协方差矩阵和相应的规范共轭矩阵简化为块对角线结构。结果,发现与经典对应物相比,使用潜在模型在分子内和分子间零点波动之间提供竞争量子效应的情况下,WPs的各向异性对于再现无序H键网络是必不可少的。另外,在H键交换机制中已经检测到沿着跳跃的氢原子的面外方向的明显的WP离域化,其与H键的一致断裂和形成有关。还讨论了动态WP扩展与缓和H键数波动的相关性。本SQ方法为研究多体分子系统中的核量子动力学提供了新颖的框架,在该系统中,核WP的局部各向异性起着至关重要的作用。

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    Ono Junichi; Ando Koji;

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  • 年度 2012
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