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Identification and analysis of Gene Regulatory Networks involved in the drought stress response in Arabidopsis thaliana

机译:拟南芥干旱胁迫响应的基因调控网络的鉴定与分析

摘要

There is a growing need to engineer an increased yield in food crops coupled with greater resistance to environmental stresses, such as drought, to meet the requirement of a growing population. As plant responses to drought (and other abiotic stress) are complex, many studies have attempted to understand the drought response in a holistic manner, for example, by analysing transcriptomics data obtained from plants subjected to drought. Preliminary work of obtaining time-series microarray data from a slow-drying experiment of Arabidopsis was used to construct Gene Regulatory Networks using Variational Bayesian State Space Modelling. This led to the identification of a number of transcription factors RAP2.12, FD, BHLH038, ANL2, and two unknown genes, UKTF and POZ, as possibly being important regulatory genes in the drought response. Loss- and gain-of-function mutants of these genes, as well as those of AGL22 identified by Bechtold et al. (2016), were phenotyped under drought conditions. Only the flowering time AGL22 showed a drought phenotype. Network connections in the gene network of AGL22 were tested by qPCR. Drought responsive transcription factors, such as DREB1A and WRKY20 were found to be induced by AGL22.
机译:为了满足不断增长的人口的需求,越来越需要设计提高粮食作物的产量以及对诸如干旱等环境压力的更大抵抗力。由于植物对干旱(和其他非生物胁迫)的响应非常复杂,因此许多研究尝试以整体方式理解干旱响应,例如,通过分析从遭受干旱的植物获得的转录组数据。从拟南芥的慢干实验中获得时间序列微阵列数据的初步工作被用于使用变分贝叶斯状态空间模型构建基因调控网络。这导致鉴定出许多转录因子RAP2.12,FD,BHLH038,ANL2和两个未知基因UKTF和POZ,它们可能是干旱反应中的重要调控基因。这些基因以及Bechtold等人鉴定的AGL22的功能丧失和获得功能突变。 (2016),是在干旱条件下的表型。仅开花时间AGL22显示干旱表型。通过qPCR测试AGL22基因网络中的网络连接。发现干旱反应转录因子,例如DREB1A和WRKY20被AGL22诱导。

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  • 作者

    Subramaniam Sunitha;

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  • 年度 2016
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  • 原文格式 PDF
  • 正文语种 en
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