This paper introduces ontology controlled model integration framework using inputoutput matching in the domain of biorefining. The framework builds upon the existing framework and replaces the Common Object Request Broker Architecture (CORBA) object bus with more flexible semantic repository. Semantic Web Services Description Ontologies (OWL-S) are used to describe model inputs, outputs, preconditions, operating environment and its functionality. The OWL-S enables the automation of model integration through (i) discovery, (ii) selection, (iii) composition, and (iv) execution stages. This concept has been verified with a small scale model integration to demonstrate the flexibility of model integration through all four stages of the process.
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