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Shared Bioinformatics Databases within the Unipro UGENE Platform

机译:Unipro UGENE平台内的共享生物信息数据库

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摘要

Unipro UGENE is an open-source bioinformatics toolkit that integrates popular tools along with original instruments for molecular biologists within a unified user interface. Nowadays, most bioinformatics desktop applications, including UGENE, make use of a local data model while processing different types of data. Such an approach causes an inconvenience for scientists working cooperatively and relying on the same data. This refers to the need of making multiple copies of certain files for every workplace and maintaining synchronization between them in case of modifications. Therefore, we focused on delivering a collaborative work into the UGENE user experience. Currently, several UGENE installations can be connected to a designated shared database and users can interact with it simultaneously. Such databases can be created by UGENE users and be used at their discretion. Objects of each data type, supported by UGENE such as sequences, annotations, multiple alignments, etc., can now be easily imported from or exported to a remote storage. One of the main advantages of this system, compared to existing ones, is the almost simultaneous access of client applications to shared data regardless of their volume. Moreover, the system is capable of storing millions of objects. The storage itself is a regular database server so even an inexpert user is able to deploy it. Thus, UGENE may provide access to shared data for users located, for example, in the same laboratory or institution. UGENE is available at: http://ugene.net/download.html
机译:Unipro UGENE是一个开放源代码的生物信息学工具包,它将流行的工具与分子生物学家的原始仪器集成在统一的用户界面中。如今,大多数生物信息学桌面应用程序(包括UGENE)在处理不同类型的数据时都使用本地数据模型。这种方法给合作研究并依赖相同数据的科学家带来了不便。这是指需要为每个工作场所制作某些文件的多个副本,并在修改的情况下保持它们之间的同步。因此,我们专注于在UGENE用户体验中进行协作。当前,可以将多个UGENE安装连接到指定的共享数据库,并且用户可以同时与其进行交互。 UGENE用户可以创建此类数据库,并可以自行决定使用这些数据库。 UGENE支持的每种数据类型的对象(例如序列,注释,多重比对等)现在都可以轻松地从远程存储导入或导出到远程存储。与现有系统相比,此系统的主要优点之一是几乎可以同时访问客户端应用程序,而不管它们的容量如何。此外,该系统能够存储数百万个对象。存储本身是一个常规的数据库服务器,因此即使是不熟练的用户也可以部署它。因此,UGENE可以为例如位于同一实验室或机构中的用户提供对共享数据的访问。 UGENE可从以下网站获得:http://ugene.net/download.html

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