首页> 外文OA文献 >An Algorithm for Sequencing by Hybridization Based on an Alternating DNA Chip

【2h】

An Algorithm for Sequencing by Hybridization Based on an Alternating DNA Chip

机译：基于交替DNA芯片的杂交测序算法

代理获取

本网站仅为用户提供外文OA文献查询和代理获取服务，本网站没有原文。下单后我们将采用程序或人工为您竭诚获取高质量的原文，但由于OA文献来源多样且变更频繁，仍可能出现获取不到、文献不完整或与标题不符等情况，如果获取不到我们将提供退款服务。请知悉。

页面导航

著录项
引文网络
相似文献
相关主题

著录项

作者

展开▼
作者单位

展开▼
年度 2017
总页数
原文格式 PDF
正文语种
中图分类

相似文献

外文文献
中文文献
专利

1. An Algorithm for Sequencing by Hybridization Based on an Alternating DNA Chip [J] . Radom Marcin, Formanowicz Piotr Interdisciplinary Sciences: Computational Life Sciences . 2018,第3期

机译：基于交替DNA芯片的杂交测序算法
2. A Novel Hypergraph-Based Genetic Algorithm (HGGA) Built on Unimodular and Anti-homomorphism Properties for DNA Sequencing by Hybridization [J] . Swaminathan V., Rajaram Gangothri, Abhishek V., Interdisciplinary Sciences: Computational Life Sciences . 2019,第3期

机译：一种基于微图的遗传算法（HGGA），基于单模和抗均匀性特性，通过杂交进行DNA测序
3. Interspecies hybridization on DNA resequencing microarrays: efficiency of sequence recovery and accuracy of SNP detection in human, ape, and codfish mitochondrial DNA genomes sequenced on a human-specific MitoChip [J] . Sarah MC Flynn, Steven M Carr BMC Genomics . 2007,第1期

机译：在DNA重测序微阵列上进行种间杂交：在人类特异性MitoChip上测序的人类，猿和鳕鱼线粒体DNA基因组中的序列恢复效率和SNP检测的准确性
4. Algorithms for DNA Sequencing by Hybridization: A Review [C] . Hongwei Xie, Qianqian Yuan, Ling Liao Bioinformatics and Biomedical Engineering , 2009. ICBBE 2009 . 2009

机译：杂交DNA测序的算法：综述
5. Solid-phase DNA sequencing reactions performed in micro-capillary reactors and solid-phase reversible immobilization in microfluidic chips for purification of dye-labeled DNA sequencing fragments. [D] . Xu, Yichnan. 2003

机译：在微毛细管反应器中进行固相DNA测序反应，并在微流控芯片中进行固相可逆固定，以纯化染料标记的DNA测序片段。
6. An Algorithm for Sequencing by Hybridization Based on an Alternating DNA Chip [O] . Marcin Radom, Piotr Formanowicz -1

机译：基于交替DNA芯片的杂交测序算法
7. Figure 4: (A) One conserved sequence, which occurs 79 times in 46,264 binding site peaks from the ChIP-seq data-set. The mutation profile of this conserved sequence is illustrated, where ’_ ’ indicates this base is unchanged; DEL indicates this base is lost; INS X indicates a new base X is inserted in front of this base. (B) Several repeated elements patterns are listed. (C) In the first column, the top five DNA motifs, mined by meme-chip tools (Machanick Bailey, 2011) are illustrated. The resemblant conserved sequences, found by the CFSP algorithm are listed in the second column. In the third column, the position-specific scoring matrices, which are transformed from mutational information are listed. The similarity between meme motif and resemblant conserved sequence with PSSM format was calculated via a stamp motif comparison tool (Mahony Benos, 2007). The E-values for the similarity of those pairs is displayed in the fourth column. (D) One motif is selected in each group clustered by gkmsvm descriptors, and the corresponding motif found by the CFSP algorithm is listed below. (E) There are additional datasets (File No: ENCFF100GRL, ENCFF616IRT, ENCFF870CER, Target: SREBF1) collected from https://www.encodeproject.org. The top two motifs are selected in each file using meme tools, and the corresponding motifs found by our algorithm are listed below. [O] . -1

机译：图4：（a）一种保守序列，其发生在芯片-SEQ数据集中的46,264个结合位点峰值中的79倍。说明了这种保守序列的突变分布，其中'_'表示该碱度不变; del表示此基础丢失; INS X表示新的基础X插入此基础前面。（b）列出了几种重复的元素模式。（c）在第一栏中，示出了由MEME芯片工具（Machanick＆Bailey，2011）开采的前五个DNA主题。由CFSP算法发现的相应保守序列列于第二列中。在第三列中，列出了从突变信息转换的特定位置的评分矩阵。 MEME主题与PSSM格式的相似性与PSSM格式之间的相似性通过邮票图章比较工具（Mahony＆Benos，2007）计算。这些对相似性的电子值显示在第四列中。（d）在由GKMSVM描述符聚集的每个组中选择了一个图案，下面列出了CFSP算法的相应主题。（e）从https://www.encodeproject.org收集的，有附加数据集（文件no：cernff100grl，cenf616irl，conf8.20cer，target：srebf1）。使用MEME工具在每个文件中选择前两个图案，并且我们的算法发现的相应主题如下所示。

An Algorithm for Sequencing by Hybridization Based on an Alternating DNA Chip

著录项

引文网络

相似文献

相关主题

期刊订阅