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Fluorescence Microscopy Imaging Denoising with Log-Euclidean Priors and Photobleaching Compensation

机译:对数欧式先验和光漂白补偿的荧光显微镜成像降噪

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摘要

Fluorescent protein microscopy imaging is nowadays one of the most important tools in biomedical research. However, the resulting images present a low signal to noise ratio and a time intensity decay due to the photobleaching effect. This phenomenon is a consequence of the decreasing on the radiation emission efficiency of the tagging protein. This occurs because the fluorophore permanently loses its ability to fluoresce, due to photochemical reactions induced by the incident light. The Poisson multiplicative noise that corrupts these images, in addition with its quality degradation due to photobleaching, make long time biological observation processes very difficult. In this paper a denoising algorithm for Poisson data, where the photobleaching effect is explicitly taken into account, is described. The algorithm is designed in a Bayesian framework where the data fidelity term models the Poisson noise generation process as well as the exponential intensity decay caused by the photobleaching. The prior term is conceived with Gibbs priors and log-Euclidean potential functions, suitable to cope with the positivity constrained nature of the parameters to be estimated.Monte Carlo tests with synthetic data are presented to characterize the performance of the algorithm. One example with real data is included to illustrate its application.
机译:如今,荧光蛋白显微镜成像是生物医学研究中最重要的工具之一。然而,由于光漂白效应,所得图像呈现低信噪比和时间强度衰减。这种现象是标记蛋白的放射发射效率降低的结果。发生这种情况是因为由于入射光引起的光化学反应,荧光团永久失去了发荧光的能力。破坏这些图像的泊松乘法噪声,以及由于光漂白而导致的质量下降,使长时间的生物学观察过程变得非常困难。本文描述了一种泊松数据的去噪算法,其中明确考虑了光漂白效应。该算法是在贝叶斯框架中设计的,其中数据保真度项对泊松噪声生成过程以及由光漂白引起的指数强度衰减进行建模。该先验项是用吉布斯先验和对数-欧几里得势函数构想的,适合应付要估计的参数的正性约束性质。提出了带有综合数据的蒙特卡洛检验以表征算法的性能。包含一个带有真实数据的示例以说明其应用。

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