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Theoretical model estimation of guest diffusion in Metal-Organic Frameworks (MOFs)

机译:金属有机框架(MOF)中客体扩散的理论模型估计

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摘要

Characterizing molecule diffusion in nanoporous matrices is critical to understanding the novel chemical and physical properties of metal-organic frameworks (MOFs). In this paper, we developed a theoretical model to fastly and accurately compute the diffusion rate of guest molecules in a zeolitic imidazolate framework-8 (ZIF-8). The ideal gas or equilibrium solution diffusion model was modified to contain the effect of periodical media via introducing the possibility of guests passing through the framework gate. The only input in our model is the energy barrier of guests passing through the MOF’s gate. Molecular dynamics (MD) methods were employed to gather the guest density profile, which then was used to deduce the energy barrier values. This produced reliable results that require a simulation time of 5 picoseconds, which is much shorter when using pure MD methods (in the billisecond scale) . Also, we used density functional theory (DFT) methods to obtain the energy profile of guests passing through gates, as this does not require specification of a force field for the MOF degrees of freedom. In the DFT calculation, we only considered one gate of MOFs each time; as this greatly reduced the computational cost. Based on the obtained energy barrier values we computed the diffusion rate of alkane and alcohol in ZIF-8 using our model, which was in good agreement with experimental test results and the calculation values from standard MD model. Our model shows the advantage of obtaining accurate diffusion rates for guests in MOFs for a lower computational cost and shorter calculation time. Thus, our analytic model calculation is especially attractive for high-throughput computational screening of the dynamic performance of guests in a framework.
机译:表征纳米多孔基质中的分子扩散对理解金属有机骨架(MOF)的新颖化学和物理性质至关重要。在本文中,我们开发了一个理论模型来快速准确地计算客体分子在沸石咪唑酸酯骨架8(ZIF-8)中的扩散速率。修改了理想气体或平衡溶液扩散模型,以通过引入来宾穿过框架门的可能性来包含周期性介质的影响。我们模型中唯一的输入是客人穿过MOF大门的能量屏障。分子动力学(MD)方法被用来收集客体密度分布,然后被用来推导能垒值。这产生了可靠的结果,需要5皮秒的仿真时间,这在使用纯MD方法时(以毫秒为单位)要短得多。另外,我们使用密度泛函理论(DFT)方法来获得通过门的客人的能量分布,因为这不需要为MOF自由度指定力场。在DFT计算中,我们每次只考虑一个MOF门。因为这大大降低了计算成本。根据获得的能垒值,我们使用我们的模型计算了ZIF-8中烷烃和酒精的扩散速率,这与实验测试结果和标准MD模型的计算值非常吻合。我们的模型显示出为MOF中的来宾获得准确扩散率的优势,从而降低了计算成本并缩短了计算时间。因此,我们的分析模型计算对于框架中来宾动态性能的高通量计算筛选特别有吸引力。

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