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Overview of mathematical approaches used to model bacterial chemotaxis I: the single cell.

机译:用于模拟细菌趋化性的数学方法概述I:单个细胞。

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摘要

Mathematical modeling of bacterial chemotaxis systems has been influential and insightful in helping to understand experimental observations. We provide here a comprehensive overview of the range of mathematical approaches used for modeling, within a single bacterium, chemotactic processes caused by changes to external gradients in its environment. Specific areas of the bacterial system which have been studied and modeled are discussed in detail, including the modeling of adaptation in response to attractant gradients, the intracellular phosphorylation cascade, membrane receptor clustering, and spatial modeling of intracellular protein signal transduction. The importance of producing robust models that address adaptation, gain, and sensitivity are also discussed. This review highlights that while mathematical modeling has aided in understanding bacterial chemotaxis on the individual cell scale and guiding experimental design, no single model succeeds in robustly describing all of the basic elements of the cell. We conclude by discussing the importance of this and the future of modeling in this area.
机译:细菌趋化性系统的数学建模在帮助理解实验观察方面具有影响力和洞察力。我们在这里提供了用于在单个细菌内建模由环境中外部梯度变化引起的趋化过程的数学方法范围的全面概述。详细讨论了已研究和建模的细菌系统的特定区域,包括响应引诱剂梯度的适应性建模,细胞内磷酸化级联,膜受体聚类以及细胞内蛋白质信号传导的空间建模。还讨论了生成针对适应性,增益和灵敏度的鲁棒模型的重要性。这篇综述着重指出,虽然数学建模有助于理解单个细胞尺度上的细菌趋化性并指导实验设计,但没有哪个模型能够成功地描述细胞的所有基本元素。最后,我们讨论了这一点的重要性以及该领域建模的未来。

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