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ATD: a multiplatform for semiautomatic 3-D detection of kidneys and their pathology in real time

机译:ATD:用于实时半自动3D肾脏和肾脏病理检测的多平台

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摘要

This research presents a novel multi-functional system for medical Imaging-enabled Assistive Diagnosis (IAD). Although the IAD demonstrator has focused on abdominal images and supports the clinical diagnosis of kidneys using CT/MRI imaging, it can be adapted to work on image delineation, annotation and 3D real-size volumetric modelling of other organ structures such as the brain, spine, etc. The IAD provides advanced real-time 3D visualisation and measurements with fully automated functionalities as developed in two stages. In the first stage, via the clinically driven user interface, specialist clinicians use CT/MRI imaging datasets to accurately delineate and annotate the kidneys and their possible abnormalities, thus creating “3D Golden Standard Models”. Based on these models, in the second stage, clinical support staff i.e. medical technicians interactively define model-based rules and parameters for the integrated “Automatic Recognition Framework” to achieve results which are closest to that of the clinicians. These specific rules and parameters are stored in “Templates” and can later be used by any clinician to automatically identify organ structures i.e. kidneys and their possible abnormalities. The system also supports the transmission of these “Templates” to another expert for a second opinion. A 3D model of the body, the organs and their possible pathology with real metrics is also integrated. The automatic functionality was tested on eleven MRI datasets (comprising of 286 images) and the 3D models were validated by comparing them with the metrics from the corresponding “3D Golden Standard Models”. The system provides metrics for the evaluation of the results, in terms of Accuracy, Precision, Sensitivity, Specificity and Dice Similarity Coefficient (DSC) so as to enable benchmarking of its performance. The first IAD prototype has produced promising results as its performance accuracy based on the most widely deployed evaluation metric, DSC, yields 97% for the recognition of kidneys and 96% for their abnormalities; whilst across all the above evaluation metrics its performance ranges between 96% and 100%. Further development of the IAD system is in progress to extend and evaluate its clinical diagnostic support capability through development and integration of additional algorithms to offer fully computer-aided identification of other organs and their abnormalities based on CT/MRI/Ultra-sound Imaging.
机译:这项研究提出了一种用于医学影像的辅助诊断(IAD)的新型多功能系统。尽管IAD演示器专注于腹部图像并支持使用CT / MRI成像对肾脏进行临床诊断,但它仍可适用于其他器官结构(如大脑,脊柱)的图像描绘,注释和3D实际体积建模IAD可提供先进的实时3D可视化和测量功能,并具有两个阶段开发的全自动功能。在第一阶段,通过临床驱动的用户界面,专业临床医生使用CT / MRI成像数据集准确描绘和注释肾脏及其可能的异常,从而创建“ 3D黄金标准模型”。在第二阶段的基础上,基于这些模型,临床支持人员(即,医疗技术人员)为集成的“自动识别框架”交互式定义基于模型的规则和参数,以取​​得与临床医生最接近的结果。这些特定的规则和参数存储在“模板”中,以后可被任何临床医生用来自动识别器官结构,即肾脏及其可能的异常。该系统还支持将这些“模板”传输给另一位专家,以征求其第二意见。还集成了具有真实指标的人体,器官及其可能病理的3D模型。在11个MRI数据集(包含286张图像)上测试了自动功能,并通过将其与相应的“ 3D黄金标准模型”中的指标进行比较来验证3D模型。该系统根据准确性,精确性,敏感性,特异性和骰子相似性系数(DSC)提供了用于评估结果的指标,从而可以对其性能进行基准测试。 IAD的第一个原型已经产生了令人鼓舞的结果,因为它基于最广泛使用的评估指标DSC的性能准确性,对肾脏的识别率高达97%,对于异常的识别率高达96%。而在所有上述评估指标中,其效果介于96%和100%之间。 IAD系统的进一步开发正在进行中,以通过开发和集成其他算法来扩展和评估其临床诊断支持能力,从而基于CT / MRI /超声成像对其他器官及其异常进行完全计算机辅助的识别。

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