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Identification and functional annotation of genes differentially expressed in the reproductive tissues of the olive tree (Olea europaea L.) through the generation of subtractive libraries

机译:鉴定和功能注释的基因通过减性文库的生成在橄榄树(油橄榄)的生殖组织中差异表达

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摘要

The olive tree gives a crop of high socio-economical importance in the Mediterranean area. Sexual reproduction in this plant is an essential process, which determines the yield. Successful fertilization is mainly favored and sometimes needed of the presence of pollen grains from a different cultivar as the olive seizes a self-compatibility system allegedly determined of the sporophytic type. The purpose of the present study was to identify key gene products involved in the function of olive pollen and pistil, in order to help elucidate the events and signaling processes, which happen during the courtship, pollen grain germination, and fertilization in olive. The use of subtractive SSH libraries constructed using, on the one hand one specific stage of the pistil development withudgerminating pollen grains, and on the other hand mature pollen grains may help to reveal the specific transcripts involved in the cited events. Such libraries have also been created by subtracting vegetative mRNAs (from leaves), in order to identify reproductive sequences only. A variety of transcripts have been identified in the mature pollen grains and in the pistil at the receptive stage. Among them, those related to defense, transport and oxidative metabolism are highlighted mainly in the pistiludlibraries where transcripts related to stress, and response to biotic and abiotic stimulus have a prominent position. Extensive lists containing information as regard to the specific transcripts determined for each stage and tissue are provided, as well as functional classifications of these gene products. Such lists were faced up to two recent datasets obtained in olive after transcriptomic and genomic approaches. The sequences and the differential expression level of the SSH-transcripts identified here, highly matched the transcriptomic information. Moreover, the unique presence of a representative number of these transcripts has been validated by means of qPCR approaches. The construction of SSH libraries using pistil and pollen, considering the high interaction between male-female counterparts, allowed the identification of transcripts with important roles in stigma physiology. The functions of many of the transcripts obtained are intimately related, and most of them are of pivotal importance in defense,udpollen-stigma interaction and signaling.
机译:橄榄树在地中海地区具有很高的社会经济意义。这种植物的有性繁殖是决定产量的重要过程。成功的施肥主要是受青睐,有时还需要来自不同品种的花粉粒,因为橄榄抓住了据称由孢子型决定的自交系统。本研究的目的是鉴定参与橄榄花粉和雌蕊功能的关键基因产物,以帮助阐明在求爱,花粉粒萌发和橄榄受精过程中发生的事件和信号传导过程。一方面使用雌蕊发育的特定阶段构建花粉粒,另一方面使用成熟的花粉粒来构建减性SSH文库,这可能有助于揭示所涉及事件的特定转录本。还通过减去营养mRNA(从叶中)来创建此类文库,以便仅鉴定生殖序列。在接受阶段,在成熟的花粉粒和雌蕊中已鉴定出多种转录本。其中,与防御,运输和氧化代谢有关的那些主要在雌蕊/图书馆中突出显示,其中与压力有关的转录本以及对生物和非生物刺激的反应占主导地位。提供了广泛的列表,其中包含有关为每个阶段和组织确定的特定转录本的信息,以及这些基因产物的功能分类。经过转录组学和基因组学方法研究后,这样的名单面临着橄榄中获得的两个最新数据集。此处确定的SSH转录本的序列和差异表达水平与转录组信息高度匹配。此外,已经通过qPCR方法证实了代表性数量的这些转录物的独特存在。考虑到雌性和雌性之间的高度相互作用,使用雌蕊和花粉构建SSH文库可以鉴定在柱头生理中具有重要作用的转录本。获得的许多转录物的功能密切相关,并且大多数在防御,花粉-柱头相互作用和信号传导中具有至关重要的作用。

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