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Objective automated quantification of fluorescence signal in histological sections of rat lens

机译:客观自动量化大鼠晶状体组织切片中的荧光信号

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摘要

Purpose: To develop an automated method to delineate lens epithelial cells and to quantify expression of fluorescent signal of biomarkers in each nucleus and cytoplasm of lens epithelial cells in a histological section. Methods: An automated algorithm was developed in Matlab™ to localize and quantify fluorescence signal in lens epithelial cells in histological images. A region of interest representing the lens epithelium was manually demarcated in each input image. Individual cell nuclei within the region of interest were automatically delineated based on watershed segmentation and thresholding. Fluorescence signal was quantified within nuclei and cytoplasms. The classification of fluorescence signal was based on local background. Classification of cells as labelled or not labelled was thereafter optimized as compared to visual classification of a limited dataset. The performance of the automated classification was evaluated by asking eleven independent blinded observers to classify all cells (n=395) in one lens image. Time consumed by the automatic algorithm and visual /manual classification of nuclei, was recorded. Results: On an average, 77 % of the cells were correctly classified as compared to the majority vote of the visual observers. The average agreement among visual observers was 83 %. However, variation among visual observers was high, and agreement between two visual observers was as low as 71 % in the worst case. Automated classification was on average 10 times faster than manual scoring. Conclusion: The presented method enables objective and fast detection of lens epithelial cells and quantification of expression of fluorescent signal in a histological section of rat lens, with accuracy comparable to the variability between different visual observers. Furthermore, automated scoring is unbiased and reproducible, and results in a 10-fold increase in throughput.
机译:目的:开发一种描绘透镜上皮细胞的自动化方法,并在组织学部分中量化晶状体上皮细胞中每个细胞核和细胞质中生物标志物的表达。方法:在Matlab™中开发了自动算法,在组织图中的透镜上皮细胞中定位和量化荧光信号。代表镜头上皮的感兴趣区域在每个输入图像中手动划分。根据流域的分割和阈值化,感兴趣区域内的个体细胞核自动描绘。荧光信号在核和细胞质内量化。荧光信号的分类基于局部背景。与有限数据集的可视分类相比,此后,如图所示的标记为标记的细胞分类。通过询问11个独立的蒙蔽观察者在一个透镜图像中对所有细胞(n = 395)分类来评估自动分类的性能。记录了自动算法和核的视觉/手动分类所消耗的时间。结果:与视觉观察者的大多数投票相比,平均而言,77%的细胞被正确归类。视觉观察者之间的平均协议为83%。然而,视觉观察者之间的变化很高,两个视觉观察者之间的一致性在最坏情况下低至71%。自动分类平均比手动评分快10倍。结论:呈现的方法使得能够进行目标和快速地检测镜头上皮细胞,并在大鼠镜片组织段中的荧光信号表达的量化,精度与不同视觉观察者之间的变异相当。此外,自动评分是无偏见和可再现的,并且导致吞吐量增加10倍。

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