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Fitting macroevolutionary models to phylogenies: an example using vertebrate body sizes

机译:拟合宏观调度模型到文学:使用脊椎动物尺寸的示例

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摘要

How do traits change through time and with speciation? We present a simple and generally applicable method for comparing various models of the macroevolution of traits within a maximum likelihood framework. We illustrate four such models: 1) variance among species accumulates in direct proportion to time separating them (gradual model); 2) variation accumulates with the number of speciation events separating them (speciational model); 3) differences between species are unrelated to phylogenetic relatedness (pitchfork model); and 4) a free model where the trait evolves at its own idiosyncratic rate among lineages. Using species-specific body size, we compare the four models across two data sets: twenty-one clades of vertebrate species, and two clades of bird families. For the twenty-one vertebrate trees, the pitchfork model is most successful, though not significantly, and the most successful by far for the youngest clades. The speciational model seems to be preferred for older clades. For both clades of bird families, the speciational model offers the best fit to family-level body size evolution. However, the pitchfork model does much worse for one clade than for the other, suggesting a difference in the relationship between diversification and body-size evolution in the two groups. These examples highlight some possibilities afforded by this simple approach.
机译:特征如何通过时间和形态改变?我们介绍了一种简单且通常适用的方法,用于比较最大似然框架内的特征的各种模型。我们说明了四种这样的型号:1)物种之间的方差累积与时间分离时的直接比例(逐渐模型); 2)变化随着分离它们的物种事件的数量(物质模型); 3)物种之间的差异与系统发育相关性无关(干草叉模型); 4)一种自由型号,特质在谱系之间​​以自己的特质流速发展。使用特定物种的体型,我们将四种模型进行比较两种数据集:二十一片脊椎动物种类,以及两种鸟类家庭的龟。对于二十一根脊椎动物树木,干草灶模型最为成功,但没有显着,最为成功的是最年轻的林业。规格模型似乎是较古老的曲折的优选。对于鸟类家庭的两种腕表,物质模式提供了最适合家庭级体尺寸的进化。然而,吸收器模型对于一个人的速度来说比另一个人的速度更差,这表明两组多样化和体型演化之间的关系差异。这些示例突出了这种简单方法所提供的一些可能性。

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