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Multistability in the epithelial-mesenchymal transition network

机译:上皮区间充质转换网络中的多重性

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摘要

Abstract Background The transitions between epithelial (E) and mesenchymal (M) cell phenotypes are essential in many biological processes like tissue development and cancer metastasis. Previous studies, both modeling and experimental, suggested that in addition to E and M states, the network responsible for these phenotypes exhibits intermediate phenotypes between E and M states. The number and importance of such states is subject to intense discussion in the epithelial-mesenchymal transition (EMT) community. Results Previous modeling efforts used traditional bifurcation analysis to explore the number of the steady states that correspond to E, M and intermediate states by varying one or two parameters at a time. Since the system has dozens of parameters that are largely unknown, it remains a challenging problem to fully describe the potential set of states and their relationship across all parameters. We use the computational tool DSGRN (Dynamic Signatures Generated by Regulatory Networks) to explore the intermediate states of an EMT model network by computing summaries of the dynamics across all of parameter space. We find that the only attractors in the system are equilibria, that E and M states dominate across parameter space, but that bistability and multistability are common. Even at extreme levels of some of the known inducers of the transition, there is a certain proportion of the parameter space at which an E or an M state co-exists with other stable steady states. Conclusions Our results suggest that the multistability is broadly present in the EMT network across parameters and thus response of cells to signals may strongly depend on the particular cell line and genetic background.
机译:摘要背景上皮(e)和间充质(M)细胞表型之间的过渡在组织发育和癌症转移等许多生物方法中是必不可少的。以前的研究,建模和实验,建议除了E和M状态之外,负责这些表型的网络还表现出E和M状态之间的中间表型。这些国家的数量和重要性受到上皮性 - 间充质转换(EMT)社区的剧烈讨论。结果以前的建模努力,使用传统的分岔分析来探索与E,M,M和中间状态相对应的稳定状态的数量。由于系统具有很大程度上未知的数十个参数,因此完全描述了所有参数的潜在状态和关系仍然是一个具有挑战性的问题。我们使用计算工具DSGRN(由监管网络生成的动态签名)来探索EMT模型网络的中间状态,通过计算所有参数空间的动态摘要。我们发现系统中唯一的吸引子是均衡,即e和m状态在参数空间中占主导地位,但是,双稳态和多个是常见的。即使在过渡的一些已知的诱导剂的极端水平,也有一定比例的参数空间,其中E或M状态与其他稳定稳定状态共存。结论我们的结果表明,多个能力广泛存在于跨参数的EMT网络中,因此细胞对信号的响应可能强烈依赖于特定的细胞系和遗传背景。

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