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Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space

机译：通过GPU加速的种子和扩展搜索空间的限制更快序列对齐

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Richard Wilton; Tamas Budavari; Ben Langmead; Sarah J Wheelan; Steven Salzberg; Alex Szalay;
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年度 2014
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1. GSWABE: faster GPU-accelerated sequence alignment with optimal alignment retrieval for short DNA sequences [J] . Yongchao Liu, Bertil Schmidt Concurrency, practice and experience . 2015,第4期

机译：GSWABE：更快的GPU加速序列比对，以及针对短DNA序列的最佳比对检索
2. Fast analysis of DNA and protein sequence on Apple IIe: restriction sites search, alignment of short sequence and dot matrix analysis [J] . Christian Marck Nucleic acids research . 1986,第1期

机译：在Apple IIe上快速分析DNA和蛋白质序列：限制位点搜索，短序列比对和点矩阵分析
3. Fast analysis of DNA and protein sequence on Apple IIe: restriction sites search, alignment of short sequence and dot matrix analysis [J] . Christian Marck Nucleic acids research . 1986,第1期

机译：在Apple IIe上快速分析DNA和蛋白质序列：限制位点搜索，短序列比对和点矩阵分析
4. Faster GPU-Accelerated Smith-Waterman Algorithm with Alignment Backtracking for Short DNA Sequences [C] . Yongchao Liu, Bertil Schmidt International conference on parallel processing and applied mathematics . 2014

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5. Local Alignment on Highly Unbalanced DNA Sequence Lengths by Reducing Search Space [D] . Lugo-Beauchamp, Wilfredo Enrique 2016

机译：通过减少搜索空间对高度不平衡的DNA序列长度进行局部比对
6. Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space [O] . Richard Wilton, Tamas Budavari, Ben Langmead, -1

机译：Arioc：通过GPU加速探索种子和扩展搜索空间实现高通量读取对齐
7. Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space [O] . Richard Wilton, Tamas Budavari, Ben Langmead, 2015

机译：arioc：通过GpU加速探索种子和扩展搜索空间的高吞吐量读取对齐

Faster sequence alignment through GPU-accelerated restriction of the seed-and-extend search space

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