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Predicting essential proteins by integrating orthology, gene expressions, and PPI networks

机译:通过整合外语,基因表达和PPI网络预测基本蛋白

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摘要

Identifying essential proteins is very important for understanding the minimal requirements of cellular life and finding human disease genes as well as potential drug targets. Experimental methods for identifying essential proteins are often costly, time-consuming, and laborious. Many computational methods for such task have been proposed based on the topological properties of protein-protein interaction networks (PINs). However, most of these methods have limited prediction accuracy due to the noisy and incomplete natures of PINs and the fact that protein essentiality may relate to multiple biological factors. In this work, we proposed a new centrality measure, OGN, by integrating orthologous information, gene expressions, and PINs together. OGN determines a protein's essentiality by capturing its co-clustering and co-expression properties, as well as its conservation in the evolution process. The performance of OGN was tested on the species of Saccharomyces cerevisiae. Compared with several published centrality measures, OGN achieves higher prediction accuracy in both working alone and ensemble.
机译:鉴定必需蛋白是对了解细胞生命的最小要求以及寻找人类疾病基因以及潜在的药物靶标非常重要。用于鉴定基本蛋白质的实验方法通常是昂贵的,耗时的,耗时和费力。已经基于蛋白质 - 蛋白质相互作用网络(销)的拓扑性质提出了许多用于此类任务的计算方法。然而,由于引脚的嘈杂和不完全的自然,这些方法中的大多数具有有限的预测准确性以及蛋白质基质可以涉及多种生物因素的事实。在这项工作中,我们通过将外科信息,基因表达和引脚集成在一起,提出了新的中心度量,OGN。通过捕获其共聚类和共同表达性质,以及其在演化过程中的节约来确定蛋白质的本质。对酿酒酵母的种类进行了测试的性能。与几个公布的中心措施相比,Ign在单独工作中获得更高的预测准确性和合奏。

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