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>Figure 3: (A) Mixture of 8,448 CD138+CD38+ cells and 1,000 PBMCs on a t-SNE layout. Batch effects arising from different datasets, labeled by different colors, were removed with COMBAT. (B) Same layout as in (A) with clusters annotations. (C) Relative fractions of the annotated cell types, including cells that failed QC requirements. Such cells are excluded from plots in (A) and (B). (D) River plot showing labeled categories, from (B) and (C), and their memberships for each of the batches.
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Figure 3: (A) Mixture of 8,448 CD138+CD38+ cells and 1,000 PBMCs on a t-SNE layout. Batch effects arising from different datasets, labeled by different colors, were removed with COMBAT. (B) Same layout as in (A) with clusters annotations. (C) Relative fractions of the annotated cell types, including cells that failed QC requirements. Such cells are excluded from plots in (A) and (B). (D) River plot showing labeled categories, from (B) and (C), and their memberships for each of the batches.