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PD-1 Coexpression Gene Analysis and the Regulatory Network in Endometrial Cancer Based on Bioinformatics Analysis

机译:基于生物信息学分析的PD-1共表达基因分析与子宫内膜癌中的监管网络

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摘要

Gynecological malignancies are tumors of the female reproductive system, mainly cervical cancer, endometrial cancer, and ovarian cancer. Endometrial cancer (EC) is the most common gynecological malignant tumor in developed countries. The aim of this study was to construct a network of programmed cell death protein 1 (PD-1) coexpressed genes through bioinformatics analysis and screen the potential biomarkers of PD-1 in endometrial cancer. In addition, genes and pathways involved in PD-1 and modulating tumor immune status were identified. We select the EC transcriptomic dataset in TCGA to retrieve gene sets on the cBioPortal platform, and the PD-1 coexpressed genes were obtained on the platform. GO and KEGG enrichment analysis of coexpressed genes was performed using the DAVID database. The target protein-protein interaction (PPI) network was constructed using Cytoscape 3.7.1 software, and the hub genes were then screened. A total of 976 coexpression genes were obtained. The enrichment analysis showed that PD-1 coexpressed genes were significantly enriched in overall components of the cell structure, the interaction of cytokines with cytokine receptors, chemokine signaling pathways, and cell adhesion molecules (CAMs). Ten hub genes were obtained by node degree analysis. CD3E gene is involved in the prognosis and immune process of EC, and the expression level is related to PD-1 (Pearson correlation coefficient is 0.82, P<0.01). Patients with low CD3E gene expression in EC have a poor prognosis. The coexpression hub genes of PD-1 are related to immunity, in which CD3E is a prognostic marker that is involved in the PD-1/PD-L1-induced tumor immune escape. This study provides a new area to study the mechanism of PD-1/PD-L1 in EC and the precise treatment with targeted drugs.
机译:妇科恶性肿瘤是女性生殖系统的肿瘤,主要是宫颈癌,子宫内膜癌和卵巢癌。子宫内膜癌(EC)是发达国家最常见的妇科恶性肿瘤。本研究的目的是通过生物信息学分析构建编程细胞死亡蛋白1(PD-1)共表达基因的网络,并筛选子宫内膜癌中PD-1的潜在生物标志物。此外,还确定了参与PD-1和调节肿瘤免疫状态的基因和途径。我们在TCGA中选择EC转录组数据集以检索CBIOPortal平台上的基因集,并且在平台上获得PD-1共表达基因。使用DAVID数据库进行COEx压制基因的GO和KEGG浓缩分析。使用Cytoscape 3.7.1软件构建靶蛋白 - 蛋白质相互作用(PPI)网络,然后筛选枢纽基因。获得总共976个共表达基因。富集分析表明,在细胞结构的总体成分中,PD-1共置入基因显着富集,细胞因子与细胞因子受体,趋化因子信号传导途径和细胞粘附分子(凸轮)的相互作用。通过节点度分析获得10个轮毂基因。 CD3E基因参与EC的预后和免疫过程,表达水平与PD-1有关(Pearson相关系数为0.82,P <0.01)。 EC中CD3E基因表达低的患者具有差的预后差。 PD-1的共抑制轮毂基因与免疫有关,其中CD3E是参与PD-1 / PD-L1诱导的肿瘤免疫逸出的预后标志物。本研究提供了研究EC中PD-1 / PD-L1的机制和靶向药物的精确处理的新区域。

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