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Systematic Biology

【机译】：系统生物学

ISSN：-
出版周期：Six no. a year, 2001-
语言：English

起始发布年份：1992
出版者：Washington, D.C., USA : Society of Systematic Biologists, [1992-
出版地：England

NLM刊名缩写：Syst Biol

数据库引入：PubMed: v46n1, Mar. 1997-

MeSH词表主题词：Biology*; Biology/classification*

备注：Title from cover. Imprint varies. Also issued online.展开▼

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1.Swapping Birth and Death: Symmetries and Transformations in Phylodynamic Models

机译：交换生与死：系统动力学模型的对称性和转换
- 作者：Tanja Stadler;Mike Steel
- 期刊名称：《Systematic Biology》
- Algebraic symmetries Bayesian inference birth–death models maximum likelihood phylodynamics phylogenetics speciation–extinction models;
2.Metapopulation Vicariance Age of Island Taxa and Dispersal: A Case Study Using the Pacific Plant Genus Planchonella (Sapotaceae)

机译：种群变异岛屿分类群的年龄和散布：使用太平洋植物Planchonella（Sapotaceae）的案例研究
- 作者：Ulf Swenson;J Christopher Havran;Jérôme Munzinger;Stephen Mcloughlin;Stephan Nylinder
- 期刊名称：《Systematic Biology》
- Dispersal divergence times Fiji Hawaii metapopulation vicariance molecular dating Society Islands Vanuatu;
3.The Search for Common Origin: Homology Revisited

机译：寻找共同的起源：重新认识同源性
- 作者：Helga Ochoterena;Alexander Vrijdaghs;Erik Smets;Regine Claßen-Bockhoff
- 期刊名称：《Systematic Biology》
- Analogy character common ancestry genealogy homology homoplasy orthology paralogy;
4.A Third Strike Against Perfect Phylogeny

机译：完善系统发育的第三次攻击
- 作者：Leo Van Iersel;Mark Jones;Steven Kelk
- 期刊名称：《Systematic Biology》
- Four gamete condition local obstructions conjecture maximum parsimony perfect phylogeny phylogenetic tree;
5.Fossils with Feathers and Philosophy of Science

机译：羽毛化石与科学哲学
- 作者：Joyce C Havstad;N Adam Smith
- 期刊名称：《Systematic Biology》
- Aves avian origins Kuhn Lakatos Popper theropod hypothesis;
6.Integration of Anatomy Ontologies and Evo-Devo Using Structured Markov Models Suggests a New Framework for Modeling Discrete Phenotypic Traits

机译：使用结构化马尔可夫模型的解剖本体和Evo-Devo的集成建议建模离散表型特征的新框架。
- 作者：Sergei Tarasov
- 期刊名称：《Systematic Biology》
- Anatomy ontology character discrete trait gene regulatory networks hidden Markov models homology lumpability morphology structured Markov models;
7.An algorithm for Morphological Phylogenetic Analysis with Inapplicable Data

机译：不适用数据的形态系统发育分析算法
- 作者：Martin D Brazeau;Thomas Guillerme;Martin R Smith
- 期刊名称：《Systematic Biology》
- Character independence character optimization cladistic analysis inapplicable data phylogenetic tree search;
8.A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering

机译：一种通用探针组用于使用k-Medoids聚类设计的任何开花植物中的353个核基因的靶向测序
- 作者：Matthew G Johnson;Lisa Pokorny;Steven Dodsworth;Laura R Botigué;Robyn S Cowan;Alison Devault;Wolf L Eiserhardt;Niroshini Epitawalage;Félix Forest;Jan T Kim;James H Leebens-Mack;Ilia J Leitch;Olivier Maurin;Douglas E Soltis;Pamela S Soltis;Gane Ka-shu Wong;William J Baker;Norman J Wickett
- 期刊名称：《Systematic Biology》
- Angiosperms Hyb-Seq k-means clustering k-medoids clustering machine learning nuclear genes phylogenomics sequence capture target enrichment;
9.Golden Orbweavers Ignore Biological Rules: Phylogenomic and Comparative Analyses Unravel a Complex Evolution of Sexual Size Dimorphism

机译：黄金Orbweavers忽略生物学规则：系统发育和比较分析揭示了性大小二态性的复杂演变。
- 作者：Matjaž Kuntner;Chris A Hamilton;Ren-Chung Cheng;Matjaž Gregorič;Nik Lupše;Tjaša Lokovšek;Emily Moriarty Lemmon;Alan R Lemmon;Ingi Agnarsson;Jonathan A Coddington;Jason E Bond
- 期刊名称：《Systematic Biology》
- Body size evolution female gigantism web asymmetry Cope’s rule Rensch’s rule Nephilidae Phonognathidae Orbipurae;
10.Mitochondrial Genome Fragmentation Unites the Parasitic Lice of Eutherian Mammals

机译：线粒体基因组片段化结合了欧亚哺乳动物的寄生虱
- 作者：Fan Song;Hu Li;Guo-Hua Liu;Wei Wang;Peter James;Douglas D Colwell;Anette Tran;Siyu Gong;Wanzhi Cai;Renfu Shao
- 期刊名称：《Systematic Biology》
- Genome fragmentation mitochondrial genome parasitic lice phylogeny;
11.Phylodynamic Model Adequacy Using Posterior Predictive Simulations

机译：使用后验预测模拟的气动力学模型充分性
- 作者：Sebastian Duchene;Remco Bouckaert;David A Duchene;Tanja Stadler;Alexei J Drummond
- 期刊名称：《Systematic Biology》
- Bayesian phylogenetics BEAST2 model adequacy phylodynamics posterior predictive simulation viral evolution;
12.Modeling Hybridization Under the Network Multispecies Coalescent

机译：网络多物种合并下的杂交建模
- 作者：James H Degnan
- 期刊名称：《Systematic Biology》
- Displayed trees gene flow likelihood phylogenetic networks trait evolution;
13.Allele Phasing Greatly Improves the Phylogenetic Utility of Ultraconserved Elements

机译：等位基因分阶段极大地提高了超保守元件的系统发生效用
- 作者：Tobias Andermann;Alexandre M Fernandes;Urban Olsson;Mats Töpel;Bernard Pfeil;Bengt Oxelman;Alexandre Aleixo;Brant C Faircloth;Alexandre Antonelli
- 期刊名称：《Systematic Biology》
- Aves gene tree heterozygous sites mitochondrial genome SNP species tree target enrichment Trochilidae;
14.Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

机译：使用Tracer 1.7进行贝叶斯系统发生学的后验总结
- 作者：Andrew Rambaut;Alexei J Drummond;Dong Xie;Guy Baele;Marc A Suchard
- 期刊名称：《Systematic Biology》
- Bayesian inference Markov chain Monte Carlo phylogenetics visualization;
15.Inferring Phylogenetic Networks Using PhyloNet

机译：使用PhyloNet推断系统发生网络
- 作者：Dingqiao Wen;Yun Yu;Jiafan Zhu;Luay Nakhleh
- 期刊名称：《Systematic Biology》
- Bayesian inference incomplete lineage sorting maximum likelihood maximum parsimony multispecies network coalescent phylogenetic networks reticulation;
16.Bayesian Divergence-Time Estimation with Genome-Wide Single-Nucleotide Polymorphism Data of Sea Catfishes (Ariidae) Supports Miocene Closure of the Panamanian Isthmus

机译：海Cat鱼（全科）的全基因组单核苷酸多态性数据的贝叶斯发散时间估计支持巴拿马地峡中新世闭合。
- 作者：Madlen Stange;Marcelo R Sánchez-Villagra;Walter Salzburger;Michael Matschiner
- 期刊名称：《Systematic Biology》
- Bayesian inference Central American Seaway fossil record molecular clock Panamanian Isthmus phylogeny RAD sequencing SNPs teleosts;
17.Online Bayesian Phylogenetic Inference: Theoretical Foundations via Sequential Monte Carlo

机译：在线贝叶斯系统发生学推论：通过顺序蒙特卡洛理论的基础
- 作者：Vu Dinh;Aaron E Darling;Frederick A Matsen IV
- 期刊名称：《Systematic Biology》
- Bayesian inference effective sample size online inference phylogenetics sequential Monte Carlo subtree optimality;
18.Effective Online Bayesian Phylogenetics via Sequential Monte Carlo with Guided Proposals

机译：通过顺序蒙特卡洛有效的在线贝叶斯系统发生学和指导性建议
- 作者：Mathieu Fourment;Brian C Claywell;Vu Dinh;Connor McCoy;Frederick A Matsen IV;Aaron E Darling
- 期刊名称：《Systematic Biology》
- Bayesian inference online inference phylogenetics sequential Monte Carlo;
19.Conflicting Evolutionary Histories of the Mitochondrial and Nuclear Genomes in New World Myotis Bats

机译：新世界Myotis蝙蝠线粒体和核基因组进化史的冲突
- 作者：Roy N Platt II;Brant C Faircloth;Kevin A M Sullivan;Troy J Kieran;Travis C Glenn;Michael W Vandewege;Thomas E Lee Jr.;Robert J Baker;Richard D Stevens;David A Ray
- 期刊名称：《Systematic Biology》
- Summary tree methods concatenation vespertilionidae phylogenomics UCE ultraconserved elements;
20.Phylogenetic Factor Analysis

机译：系统发育因子分析
- 作者：Max R Tolkoff;Michael E Alfaro;Guy Baele;Philippe Lemey;Marc A Suchard
- 期刊名称：《Systematic Biology》
- Bayesian inference comparative methods morphometrics phylogenetics;
21.Genomic Signature of an Avian Lilliput Effect across the K-Pg Extinction

机译：跨K-Pg灭绝的鸟类小人效应的基因组特征
- 作者：Jacob S. Berv;Daniel J. Field
- 期刊名称：《Systematic Biology》
- Birds body size divergence times K-Pg life history evolution mass extinction metabolic rate molecular clocks;
22.A Metric on Phylogenetic Tree Shapes

机译：系统发育树形状的度量
- 作者：C. Colijn;G. Plazzotta
- 期刊名称：《Systematic Biology》
- tree metric phylodynamics tree shapes;
23.Inference of Evolutionary Jumps in Large Phylogenies using Lévy Processes

机译：使用Lévy过程推断大型系统发育进化跃迁
- 作者：Pablo Duchen;Christoph Leuenberger;Sándor M. Szilágyi;Luke Harmon;Jonathan Eastman;Manuel Schweizer;Daniel Wegmann
- 期刊名称：《Systematic Biology》
24.Construction of a Species-Level Tree of Life for the Insects and Utility inTaxonomic Profiling

机译：为昆虫和实用程序建立物种级生命树分类学分析
- 作者：Douglas Chesters
- 期刊名称：《Systematic Biology》
- Data integration data mining insects phylogenomics phyloinformatics tree of life;
25.Erratum

机译：勘误表
- 期刊名称：《Systematic Biology》
26.Displayed Trees Do Not Determine Distinguishability Under the Network Multispecies Coalescent

机译：在网络多物种合并下显示的树无法确定可分辨性
- 作者：Sha Zhu;James H. Degnan
- 期刊名称：《Systematic Biology》
- gene tree hybridization identifiability maximum likelihood species tree phylogeny;
27.Possibility and Challenges of Conversion of Current Virus Species Names to Linnaean Binomials

机译：当前病毒种类名称转换为Linnaean Binomials的可能性和挑战
- 作者：Thomas S. Postler;Anna N. Clawson;Gaya K. Amarasinghe;Christopher F. Basler;Sbina Bavari;Mária Benkő;Kim R. Blasdell;Thomas Briese;Michael J. Buchmeier;Alexander Bukreyev;Charles H. Calisher;Kartik Chandran;Rémi Charrel;Christopher S. Clegg;Peter L. Collins;De La Torre Juan Carlos;Joseph L. Derisi;Ralf G. Dietzgen;Olga Dolnik;Ralf Dürrwald;John M. Dye;Andrew J. Easton;Sébastian Emonet;Pierre Formenty;Ron A. M. Fouchier;Elodie Ghedin;Jean-Paul Gonzalez;Balázs Harrach;Roger Hewson;Masayuki Horie;Dàohóng Jiāng;Gary Kobinger;Hideki Kondo;Andrew M. Kropinski;Mart Krupovic;Gael Kurath;Robert A. Lamb;Eric M. Leroy;Igor S. Lukashevich;Andrea Maisner;Arcady R. Mushegian;Sergey V. Netesov;Norbert Nowotny;Jean L. Patterson;Susan L. Payne;Janusz T. PaWeska;Clarence J. Peters;Sheli R. Radoshitzky;Bertus K. Rima;Victor Romanowski;Dennis Rubbenstroth;Sead Sabanadzovic;Hélène Sanfaçon;Maria S. Salvato;Martin Schwemmle;Sophie J. Smither;Mark D. Stenglein;David M. Stone;Ayato Takada;Robert B. Tesh;Keizo Tomonaga;Noël Tordo;Jonathan S. Towner;Nikos Vasilakis;Viktor E. Volchkov;Victoria Wahl-Jensen;Peter J. Walker;Lin-Fa Wang;Arvind Varsani;Anna E. Whitfield;F. Murilo Zerbini;Jens H. Kuhn
- 期刊名称：《Systematic Biology》
- Arenaviridae binomials ICTV International Committee on Taxonomy of Viruses Mononegavirales virus nomenclature virus taxonomy;
28.A Relaxed Directional Random Walk Model for Phylogenetic Trait Evolution

机译：系统发育性状进化的松弛方向随机游动模型
- 作者：Mandev S. Gill;Lam Si Tung Ho;Guy Baele;Philippe Lemey;Marc A. Suchard
- 期刊名称：《Systematic Biology》
- Brownian Motion Diffusion Processes Phylodynamics Phylogenetics Phylogeography Trait Evolution;
29.Efficient Detection of Repeating Sites to Accelerate Phylogenetic Likelihood Calculations

机译：有效检测重复位点以加快系统发生可能性的计算
- 作者：K. Kobert;A. Stamatakis;T. Flouri
- 期刊名称：《Systematic Biology》
- Algorithms maximum likelihood phylogenetic likelihood function phylogenetics;
30.Toward a Self-Updating Platform for Estimating Rates of Speciation and Migration Ages and Relationships of Taxa

机译：建立一个自我更新的平台以估计物种和迁徙的速率年龄和种类的关系
- 作者：Alexandre Antonelli;Hannes Hettling;Fabien L. Condamine;Karin Vos;R. Henrik Nilsson;Michael J. Sanderson;Hervé Sauquet;Ruud Scharn;Daniele Silvestro;Mats Töpel;Christine D. Bacon;Bengt Oxelman;Rutger A. Vos
- 期刊名称：《Systematic Biology》
- Bayesian phylogenetics data mining divide-and-conquer methods GenBank multilocus multispecies coalescent next-generation sequencing palms primates tree calibration;
31.Evolutionary Patterns and Processes: Lessons from Ancient DNA

机译：进化模式和过程：古代DNA的教训
- 作者：Michela Leonardi;Pablo Librado;Clio Der Sarkissian;Mikkel Schubert;Ahmed H. Alfarhan;Saleh A. Alquraishi;Khaled A. S. Al-Rasheid;Cristina Gamba;Eske Willerslev;Ludovic Orlando
- 期刊名称：《Systematic Biology》
- Ancient DNA metagenomics palaeogenomics population genomics temporal sampling;
32.Review Paper: The Shape of Phylogenetic Treespace

机译：评论文章：系统发育树空间的形状
- 作者：Katherine St. John
- 期刊名称：《Systematic Biology》
- Maximum likelihood maximum parsimony tree metrics treespace;
33.Species-Level Para- and Polyphyly in DNA Barcode Gene Trees: Strong Operational Bias in European Lepidoptera

机译：DNA条形码基因树中的物种级副和多形：欧洲鳞翅目的强烈操作偏见。
- 作者：Marko Mutanen;Sami M. Kivelä;Rutger A. Vos;Camiel Doorenweerd;Sujeevan Ratnasingham;Axel Hausmann;Peter Huemer;Vlad Dincă;Erik J. van Nieukerken;Carlos Lopez-Vaamonde;Roger Vila;Leif Aarvik;Thibaud Decaëns;Konstantin A. Efetov;Paul D. N. Hebert;Arild Johnsen;Ole Karsholt;Mikko Pentinsaari;Rodolphe Rougerie;Andreas Segerer;Gerhard Tarmann;Reza Zahiri;H. Charles J. Godfray
- 期刊名称：《Systematic Biology》
- DNA barcoding gene tree Lepidoptera mitochondrial COI mitochondrial cox1 paraphyly polyphyly species delimitation species monophyly;
34.RevBayes: Bayesian Phylogenetic Inference Using Graphical Models and an Interactive Model-Specification Language

机译：RevBayes：使用图形模型和交互式模型规范语言的贝叶斯系统发生推理
- 作者：Sebastian Höhna;Michael J. Landis;Tracy A. Heath;Bastien Boussau;Nicolas Lartillot;Brian R. Moore;John P. Huelsenbeck;Fredrik Ronquist
- 期刊名称：《Systematic Biology》
35.Exploring Phylogenetic Relationships within Myriapoda and the Effects of Matrix Composition and Occupancy on Phylogenomic Reconstruction

机译：探索千足虫内部的亲缘关系以及基质组成和占有率对系统重建的影响
- 作者：Rosa Fernández;Gregory D. Edgecombe;Gonzalo Giribet
- 期刊名称：《Systematic Biology》
- Chilopoda Diplopoda gene tree missing data node calibration species tree Symphyla;
36.Estimating Bayesian Phylogenetic Information Content

机译：估计贝叶斯系统发生信息量
- 作者：Paul O. Lewis;Ming-Hui Chen;Lynn Kuo;Louise A. Lewis;Karolina Fučíková;Suman Neupane;Yu-Bo Wang;Daoyuan Shi
- 期刊名称：《Systematic Biology》
37.Measuring Stratigraphic Congruence Across Trees Higher Taxa and Time

机译：跨树较高的分类单元和时间测量地层一致性
- 作者：Anne OConnor;Matthew A. Wills
- 期刊名称：《Systematic Biology》
38.A Rapid and Scalable Method for Multilocus Species Delimitation Using Bayesian Model Comparison and Rooted Triplets

机译：贝叶斯模型比较和有根三重态的快速可扩展的多位点物种定界方法
- 作者：Tomochika Fujisawa;Amr Aswad;Timothy G. Barraclough
- 期刊名称：《Systematic Biology》
- Bacterial species Bayesian model comparison Dynamic programming Multilocus species delimitation;
39.How Well Can We Detect Lineage-Specific Diversification-Rate Shifts? A Simulation Study of Sequential AIC Methods

机译：我们如何才能很好地检测沿袭特定的多元化率变化？顺序AIC方法的仿真研究
- 作者：Michael R. May;Brian R. Moore
- 期刊名称：《Systematic Biology》
40.Comparison of Target-Capture and Restriction-Site Associated DNA Sequencing for Phylogenomics: A Test in Cardinalid Tanagers (Aves Genus: Piranga)

机译：与靶标捕获和限制性位点相关的DNA测序进行人为基因组学的比较：基尼坦牛羚的试验（Aves属：Piranga）
- 作者：Joseph D. Manthey;Luke C. Campillo;Kevin J. Burns;Robert G. Moyle
- 期刊名称：《Systematic Biology》
- Birds phylogenomics Piranga restriction-site associated DNA sequencing species tree methods target capture ultraconserved elements;
41.Maximum Likelihood Phylogenetic Inference is Consistent on Multiple Sequence Alignments with or without Gaps

机译：最大似然系统发生推论在多个序列比对中一致有或没有空位
- 作者：Jakub Truszkowski;Nick Goldman
- 期刊名称：《Systematic Biology》
- Kullback–Leibler divergence maximum likelihood missing data multiple sequence alignment phylogeny;
42.Testing for Depérets Rule (Body Size Increase) in Mammals using Combined Extinct and Extant Data

机译：使用灭绝和现有数据的组合测试哺乳动物的Depéret规则（体大小增加）
- 作者：Folmer Bokma;Marc Godinot;Olivier Maridet;Sandrine Ladevèze;Loïc Costeur;Floréal Solé;Emmanuel Gheerbrant;Stéphane Peigné;Florian Jacques;Michel Laurin
- 期刊名称：《Systematic Biology》
- Body size Copes rule macroevolution paleontology phylogenetics;
43.A Nonstationary Markov Model Detects Directional Evolution in Hymenopteran Morphology

机译：非平稳马尔可夫模型检测膜翅目形态的定向演化
- 作者：Seraina Klopfstein;Lars Vilhelmsen;Fredrik Ronquist
- 期刊名称：《Systematic Biology》
- Bayesian inference continuous-time Markov model directional selection Hymenoptera morphology neutral evolution nonstationary positive selection Symphyta;
44.Fast Dating Using Least-Squares Criteria and Algorithms

机译：使用最小二乘准则和算法进行快速约会
- 作者：Thu-Hien To;Matthieu Jung;Samantha Lycett;Olivier Gascuel
- 期刊名称：《Systematic Biology》
- Active-set method algorithms computer simulations dating influenza (H1N1) least-squares linear algebra molecular clock serial data substitution rate estimation temporal precedence constraints viruses;
45.Geometric Morphometrics on Gene Expression Patterns Within Phenotypes: A Case Example on Limb Development

机译：表型内基因表达模式的几何形态计量学：肢体发育的一个案例
- 作者：Neus Martínez-Abadías;Roger Mateu;Martina Niksic;Lucia Russo;James Sharpe
- 期刊名称：《Systematic Biology》
- Elliptical Fourier analysis gene domain Hoxa genes limb morphogenesis Procrustes-based semilandmark whole-mount in situ hybridization;
46.Coordinated Dispersal and Pre-Isthmian Assembly of the Central American Ichthyofauna

机译：中美洲鱼腥藻的协调的分散和史前时期的大会
- 作者：Victor A. Tagliacollo;Scott M. Duke-Sylvester;Wilfredo A. Matamoros;Prosanta Chakrabarty;James S. Albert
- 期刊名称：《Systematic Biology》
- Caribbean plate Central America Cichlidae Greater Antilles historical biogeography parametric biogeography Poeciliidae;
47.An Efficient Independence Sampler for Updating Branches in Bayesian Markov chain Monte Carlo Sampling of Phylogenetic Trees

机译：一个有效的独立采样器用于更新系统进化树的贝叶斯马尔可夫链蒙特卡洛采样中的分支
- 作者：Andre J. Aberer;Alexandros Stamatakis;Fredrik Ronquist
- 期刊名称：《Systematic Biology》
- Bayesian inference independence sampling Markov chain Monte Carlo Newton-Raphson optimization phylogenetics proposal efficiency tree topology proposals;
48.Automation and Evaluation of the SOWH Test with SOWHAT

机译：使用SOWHAT进行SOWH测试的自动化和评估
- 作者：Samuel H. Church;Joseph F. Ryan;Casey W. Dunn
- 期刊名称：《Systematic Biology》
- Phylogenetics SOWH test topology test;
49.A New Hierarchy of Phylogenetic Models Consistent with Heterogeneous Substitution Rates

机译：与异质取代率相一致的系统发育模型的新层次
- 作者：Michael D. Woodhams;Jesús Fernández-Sánchez;Jeremy G. Sumner
- 期刊名称：《Systematic Biology》
- Lie Markov models Model selection ModelTest multiplicative closure phylogenetics;
50.Circumstances in Which Parsimony but not Compatibility will be Provably Misleading

机译：简约而不是兼容性可能会误导的情况
- 作者：Robert W. Scotland;Mike Steel
- 期刊名称：《Systematic Biology》
- Character compatibility homoplasy parsimony phylogenetic tree;
51.Quantifying MCMC Exploration of Phylogenetic Tree Space

机译：进化树空间的MCMC量化探索
- 作者：Chris Whidden;Frederick A. Matsen IV
- 期刊名称：《Systematic Biology》
- Markov chain Monte Carlo phylogenetic methods subtree prune-and-regraft topological peaks tree space;
52.Calibrated Birth–Death Phylogenetic Time-Tree Priors for Bayesian Inference

机译：贝叶斯推断的校准出生-死亡系统发生时间树先验
- 作者：Joseph Heled;Alexei J. Drummond
- 期刊名称：《Systematic Biology》
- Bayesian inference birth–death tree prior BEAST fossil calibrations multiple calibrations Yule prior;
53.Phylogenetics and the Human Microbiome

机译：系统发育学与人类微生物组
- 作者：Frederick A. Matsen IV
- 期刊名称：《Systematic Biology》
- human microbiome human microbiota metagenome microbial ecology phylogenetic methods 16S;
54.Maximum Likelihood Inference of Small Trees in the Presence of Long Branches

机译：长枝存在下小树的最大似然推断
- 作者：Sarah L. Parks;Nick Goldman
- 期刊名称：《Systematic Biology》
55.A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0

机译：基于GARLI 2.0的网格计算支持的系统发育分析网关
- 作者：Adam L. Bazinet;Derrick J. Zwickl;Michael P. Cummings
- 期刊名称：《Systematic Biology》
56.Supertrees Based on the Subtree Prune-and-Regraft Distance

机译：基于子树修剪和嫁接距离的超级树
- 作者：Christopher Whidden;Norbert Zeh;Robert G. Beiko
- 期刊名称：《Systematic Biology》
57.The Impact of the Rate Prior on Bayesian Estimation of Divergence Times with Multiple Loci

机译：速率先验对具有多个位点的发散时间的贝叶斯估计的影响
- 作者：Mario Dos Reis;Tianqi Zhu;Ziheng Yang
- 期刊名称：《Systematic Biology》
58.Species Delimitation using Genome-Wide SNP Data

机译：使用全基因组SNP数据进行物种界定
- 作者：Adam D. Leaché;Matthew K. Fujita;Vladimir N. Minin;Remco R. Bouckaert
- 期刊名称：《Systematic Biology》
59.Bayesian Estimation of Speciation and Extinction from Incomplete Fossil Occurrence Data

机译：基于不完整化石发生数据的物种和灭绝的贝叶斯估计
- 作者：Daniele Silvestro;Jan Schnitzler;Lee Hsiang Liow;Alexandre Antonelli;Nicolas Salamin
- 期刊名称：《Systematic Biology》
- birth-death process BDMCMC species rise and fall incomplete fossil sampling biodiversity trends macroevolution;
60.Conflicting Phylogenies for Early Land Plants are Caused by Composition Biases among Synonymous Substitutions

机译：早期陆地植物的系统发生冲突是由同义取代之间的组成偏差引起的。
- 作者：Cymon J. Cox;Blaise Li;Peter G. Foster;T. Martin Embley;Peter Civáň
- 期刊名称：《Systematic Biology》
61.Efficient Exploration of the Space of Reconciled Gene Trees

机译：对和解基因树空间的有效探索
- 作者：Gergely J. Szöllősi;Wojciech Rosikiewicz;Bastien Boussau;Eric Tannier;Vincent Daubin
- 期刊名称：《Systematic Biology》
62.Bayesian Analysis of Biogeography when the Number of Areas is Large

机译：区域数量较大时的生物地理贝叶斯分析
- 作者：Michael J. Landis;Nicholas J. Matzke;Brian R. Moore;John P. Huelsenbeck
- 期刊名称：《Systematic Biology》
63.Parsimonious Inference of Hybridization in the Presence of Incomplete Lineage Sorting

机译：存在不完整谱系排序的杂交的简约推论
- 作者：Yun Yu;R. Matthew Barnett;Luay Nakhleh
- 期刊名称：《Systematic Biology》
64.Minimizing the Average Distance to a Closest Leaf in a Phylogenetic Tree

机译：最小化系统发育树中最接近叶子的平均距离
- 作者：Frederick A. Matsen IV;Aaron Gallagher;Connor O. McCoy
- 期刊名称：《Systematic Biology》
65.Delimiting Species Using Single-Locus Data and the Generalized Mixed Yule Coalescent Approach: A Revised Method and Evaluation on Simulated Data Sets

机译：使用单基因座数据和广义混合Yule合并方法定界物种：一种修正的方法和对模拟数据集的评估
- 作者：Tomochika Fujisawa;Timothy G. Barraclough
- 期刊名称：《Systematic Biology》
66.Bayesian Tests of Topology Hypotheses with an Example from Diving Beetles

机译：贝叶斯拓扑假设的检验以潜水甲虫为例
- 作者：Johannes Bergsten;Anders N. Nilsson;Fredrik Ronquist
- 期刊名称：《Systematic Biology》
67.The Estimation of Tree Posterior Probabilities Using Conditional Clade Probability Distributions

机译：使用条件进化枝概率分布估计树后验概率
- 作者：Bret Larget
- 期刊名称：《Systematic Biology》
68.Diversity Disparity and Evolutionary Rate Estimation for Unresolved Yule Trees

机译：未解析的尤尔树的多样性差异和进化速率估计
- 作者：Forrest W. Crawford;Marc A. Suchard
- 期刊名称：《Systematic Biology》
69.Lateral Gene Transfer from the Dead

机译：死者的横向基因转移
- 作者：Gergely J. Szöllősi;Eric Tannier;Nicolas Lartillot;Vincent Daubin
- 期刊名称：《Systematic Biology》
70.TreeFix: Statistically Informed Gene Tree Error Correction Using Species Trees

机译：TreeFix：使用树种进行统计信息化的基因树错误校正
- 作者：Yi-Chieh Wu;Matthew D. Rasmussen;Mukul S. Bansal;Manolis Kellis
- 期刊名称：《Systematic Biology》
- Gene tree error correction phylogenetics reconciliation;
71.Assessing Parameter Identifiability in Phylogenetic Models Using Data Cloning

机译：使用数据克隆评估系统发育模型中的参数可识别性
- 作者：José Miguel Ponciano;J. Gordon Burleigh;Edward L. Braun;Mark L. Taper
- 期刊名称：《Systematic Biology》
- Bayesian estimation in Phylogenetics Data Cloning diagnostics Maximum Likelihood parameter estimability Parameter Identifiability;
72.Pleistocene Speciation in the Genus Populus (Salicaceae)

机译：杨属（Salicaceae）中的更新世物种
- 作者：Nicholas D. Levsen;Peter Tiffin;Matthew S. Olson
- 期刊名称：《Systematic Biology》
- Glaciation isolation-with-migration MIMAR North America species distribution model;
73.A Hierarchical Bayesian Model for Calibrating Estimates of Species Divergence Times

机译：校准物种发散时间估计的多层贝叶斯模型
- 作者：Tracy A. Heath
- 期刊名称：《Systematic Biology》
- Bayesian divergence time estimation Dirichlet process prior fossil calibration hyperprior MCMC relaxed clock;
74.Multiple Continental Radiations and Correlates of Diversification in Lupinus (Leguminosae): Testing for Key Innovation with Incomplete Taxon Sampling

机译：羽扇豆（豆科）的多种大陆辐射和多样性的相关性：使用不完整的分类群采样测试关键创新
- 作者：Christopher S. Drummond;Ruth J. Eastwood;Silvia T. S. Miotto;Colin E. Hughes
- 期刊名称：《Systematic Biology》
- Adaptive radiation ancestral state reconstruction biogeography diversification rates incomplete sampling key innovation;
75.BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics

机译：BEAGLE：统计系统发生学的应用程序接口和高性能计算库
- 作者：Daniel L. Ayres;Aaron Darling;Derrick J. Zwickl;Peter Beerli;Mark T. Holder;Paul O. Lewis;John P. Huelsenbeck;Fredrik Ronquist;David L. Swofford;Michael P. Cummings;Andrew Rambaut;Marc A. Suchard
- 期刊名称：《Systematic Biology》
- Bayesian phylogenetics GPU maximum likelihood parallel computing;
76.Best Practices for Justifying Fossil Calibrations

机译：验证化石校准的最佳实践
- 作者：James F. Parham;Philip C. J. Donoghue;Christopher J. Bell;Tyler D. Calway;Jason J. Head;Patricia A. Holroyd;Jun G. Inoue;Randall B. Irmis;Walter G. Joyce;Daniel T. Ksepka;José S. L. Patané;Nathan D. Smith;James E. Tarver;Marcel van Tuinen;Ziheng Yang;Kenneth D. Angielczyk;Jenny M. Greenwood;Christy A. Hipsley;Louis Jacobs;Peter J. Makovicky;Johannes Müller;Krister T. Smith;Jessica M. Theodor;Rachel C. M. Warnock;Michael J. Benton
- 期刊名称：《Systematic Biology》
77.Phylogeny Estimation of the Radiation of Western North American Chipmunks (Tamias) in the Face of Introgression Using Reproductive Protein Genes

机译：利用生殖蛋白基因对渗入的西部北美花栗鼠（Tamias）辐射的系统发育估计
- 作者：Noah Reid;John R. Demboski;Jack Sullivan
- 期刊名称：《Systematic Biology》
- Coalescent simulation gene tree hybridization introgression lineage sorting multilocus reproductive proteins Sciuridae species tree Tamias;
78.Generalized Mixture Models for Molecular Phylogenetic Estimation

机译：分子系统发育估计的广义混合模型
- 作者：Jason Evans;Jack Sullivan
- 期刊名称：《Systematic Biology》
- Bayesian phylogenetic inference mixture models model selection polytomous trees reversible jump Markov chain Monte–Carlo;
79.Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)?

机译：故意不完整的基因样本扩增能否改善高级蛾类和蝴蝶的系统发育估计（六足纲：鳞翅目）？
- 作者：Soowon Cho;Andreas Zwick;Jerome C. Regier;Charles Mitter;Michael P. Cummings;Jianxiu Yao;Zaile Du;Hong Zhao;Akito Y. Kawahara;Susan Weller;Donald R. Davis;Joaquin Baixeras;John W. Brown;Cynthia Parr
- 期刊名称：《Systematic Biology》
- Ditrysia gene sampling Hexapoda Lepidoptera missing data molecular phylogenetics nuclear genes taxon sampling;
80.Phylogenomic Analysis Resolves the Interordinal Relationships and Rapid Diversification of the Laurasiatherian Mammals

机译：生理系统分析解决了劳拉西瑟哺乳动物的内部关系和快速多样化。
- 作者：Xuming Zhou;Shixia Xu;Junxiao Xu;Bingyao Chen;Kaiya Zhou;Guang Yang
- 期刊名称：《Systematic Biology》
- Laurasiatheria phylogenomics rapid divergence placental mammals;
81.History Can Matter: Non-Markovian Behavior of Ancestral Lineages

机译：历史很重要：宗族的非马尔可夫行为
- 作者：Reed A. Cartwright;Nicolas Lartillot;Jeffrey L. Thorne
- 期刊名称：《Systematic Biology》
- Ancestral lineage ancestral process Hill-Robertson effect population genetics;
82.Biologically Inspired Phylogenetic Models Strongly Outperform the No Common Mechanism Model

机译：受生物启发的系统发育模型大大优于没有共同机制的模型
- 作者：John P. Huelsenbeck;Michael E. Alfaro;Marc A. Suchard
- 期刊名称：《Systematic Biology》
83.Dating Primate Divergences through an Integrated Analysis of Palaeontological and Molecular Data

机译：通过古生物学和分子数据的综合分析确定灵长类动物的分歧
- 作者：Richard D. Wilkinson;Michael E. Steiper;Christophe Soligo;Robert D. Martin;Ziheng Yang;Simon Tavaré
- 期刊名称：《Systematic Biology》
- Approximate Bayesian computation molecular phylogeny palaeontological data primate divergence;
84.An Intuitive Informative and Most Balanced Representation of Phylogenetic Topologies

机译：系统发育拓扑的直观信息量最大且最均衡的表示形式
- 作者：Wataru Iwasaki;Toshihisa Takagi
- 期刊名称：《Systematic Biology》
- Centroid wheel tree centroid representation phylogenetic tree probability distribution traveling salesman problem;
85.Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life

机译：广泛采样的多基因分析产生了分辨率良好的真核生物生命树
- 作者：Laura Wegener Parfrey;Jessica Grant;Yonas I. Tekle;Erica Lasek-Nesselquist;Hilary G. Morrison;Mitchell L. Sogin;David J. Patterson;Laura A. Katz
- 期刊名称：《Systematic Biology》
- Excavata microbial eukaryotes Rhizaria supergroups systematic error taxon sampling;
86.The Teleost Anatomy Ontology: Anatomical Representation for the Genomics Age

机译：硬骨动物解剖本体论：基因组学时代的解剖学表征
- 作者：Wasila M. Dahdul;John G. Lundberg;Peter E. Midford;James P. Balhoff;Hilmar Lapp;Todd J. Vision;Melissa A. Haendel;Monte Westerfield;Paula M. Mabee
- 期刊名称：《Systematic Biology》
- Bioinformatics devo-evo fish morphology ontology Teleostei;
87.Regional Variation Exaggerates Ecological Divergence in NicheModels

机译：区域差异夸大了生态位的生态差异楷模
- 作者：William Godsoe
- 期刊名称：《Systematic Biology》
- Allopatric speciation cohesion species concept ecological divergence ecological niche model environmental gradients species delimitation species distributions;
88.An Evolutionary Analysis of Lateral Gene Transfer in Thymidylate Synthase Enzymes

机译：胸苷酸合酶侧向基因转移的进化分析
- 作者：Adi Stern;Itay Mayrose;Osnat Penn;Shaul Shaul;Uri Gophna;Tal Pupko
- 期刊名称：《Systematic Biology》
- Evolutionary models lateral gene transfer thymidylate synthase;
89.Unifying Vertical and Nonvertical Evolution: A Stochastic ARG-based Framework

机译：统一垂直和非垂直演变：基于ARG的随机框架
- 作者：Erik W. Bloomquist;Marc A. Suchard
- 期刊名称：《Systematic Biology》
- Ancestral recombination graph Bayesian horizontal gene transfer phylogenetic network reassortment species tree;
90.Radiation of Extant Cetaceans Driven by Restructuring of the Oceans

机译：海洋重组驱动现存鲸类的辐射
- 作者：Mette E. Steeman;Martin B. Hebsgaard;R. Ewan Fordyce;Simon Y. W. Ho;Daniel L. Rabosky;Rasmus Nielsen;Carsten Rahbek;Henrik Glenner;Martin V. Sørensen;Eske Willerslev
- 期刊名称：《Systematic Biology》
- Cetacea evolution molecular phylogeny palaeo-ocean restructuring speciation;
91.Networks Trees and Treeshrews: Assessing Support and Identifying Conflict with Multiple Loci and a Problematic Root

机译：网络树和树sh：评估支持并确定具有多个基因座和问题根的冲突
- 作者：Trina E. Roberts;Eric J. Sargis;Link E. Olson
- 期刊名称：《Systematic Biology》
- Mixture model partitioned model Southeast Asia splits network treeshrew Tupaia Urogale;
92.Properties of Consensus Methods for Inferring Species Trees from Gene Trees

机译：从基因树推断物种树的共识方法的性质
- 作者：James H. Degnan;Michael DeGiorgio;David Bryant;Noah A. Rosenberg
- 期刊名称：《Systematic Biology》
- Anomalous gene tree coalescence discordance lineage sorting phylogenetics statistical consistency;
93.Is Sparse Taxon Sampling a Problem for Phylogenetic Inference?

机译：稀疏分类群采样是系统发育推断的问题吗？
- 作者：David M. Hillis;David D. Pollock;Jimmy A. McGuire;Derrick J. Zwickl
- 期刊名称：《Systematic Biology》
94.Increased Taxon Sampling Is Advantageous for Phylogenetic Inference

机译：增加的分类单元采样有利于系统发生推断
- 作者：David D. Pollock;Derrick J. Zwickl;Jimmy A. McGuire;David M. Hillis
- 期刊名称：《Systematic Biology》
95.BEAGLE 3: Improved Performance Scaling and Usability for a High-Performance Computing Library for Statistical Phylogenetics

机译：第3点：改进的性能扩展性和可用性用于统计系统遗传学的高性能计算库
- 作者：Daniel L Ayres;Michael P Cummings;Guy Baele;Aaron E Darling;Paul O Lewis;David L Swofford;John P Huelsenbeck;Philippe Lemey;Andrew Rambaut;Marc A Suchard
- 期刊名称：《Systematic Biology》
- Bayesian phylogenetics GPU maximum likelihood multicore processing parallel computing;
96.Automated Taxonomic Identification of Insects with Expert-Level Accuracy Using Effective Feature Transfer from Convolutional Networks

机译：利用卷积网络的有效特征转移以专家级的精度自动进行昆虫分类学鉴定
- 作者：Miroslav Valan;Karoly Makonyi;Atsuto Maki;Dominik Vondráček;Fredrik Ronquist
- 期刊名称：《Systematic Biology》
97.Marginal Likelihoods in Phylogenetics: A Review of Methods and Applications

机译：系统发生学中的边缘可能性：方法与应用综述
- 作者：Jamie R Oaks;Kerry A Cobb;Vladimir N Minin;Adam D Leaché
- 期刊名称：《Systematic Biology》
- Marginal likelihood model choice phylogenetics;
98.Phylotocol: Promoting Transparency and Overcoming Bias in Phylogenetics

机译：Phylotocol：促进系统发育的透明度和克服偏见。
- 作者：Melissa B DeBiasse;Joseph F Ryan
- 期刊名称：《Systematic Biology》
- Accountability confirmation bias open science phylogenetics phylotocol protocol transparency;
99.Changing Ecological Opportunities Facilitated the Explosive Diversification of New Caledonian Oxera (Lamiaceae)

机译：不断变化的生态机会促进了新喀里多尼亚草履虫（唇形科）的爆炸性多样化
- 作者：Laure Barrabé;Sébastien Lavergne;Giliane Karnadi-Abdelkader;Bryan T Drew;Philippe Birnbaum;Gildas Gâteblé
- 期刊名称：《Systematic Biology》
- Adaptive radiation allopatry leapfrog radiation Lamiaceae New Caledonia niche shifts Oxera;
100.Evaluating Statistical Multiple Sequence Alignment in Comparison to Other Alignment Methods on Protein Data Sets

机译：与蛋白质数据集上的其他比对方法相比评估统计上的多序列比对
- 作者：Michael Nute;Ehsan Saleh;Tandy Warnow
- 期刊名称：《Systematic Biology》