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Application of ISSR Markers to Analyze Molecular Relationships in Iranian Jasmine (Jasminum spp.) Accessions

机译:ISSR标记在分析伊朗茉莉(Jasminum spp。)品种的分子关系中的应用

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There are many species of jasmines in different regions of Iran in natural or cultivated form, and there is no information about their genetic status. Therefore, inter-simple sequence repeat (ISSR) analysis was used to evaluate genetic variations of the 53 accessions representing eight species of Jasminum collected from different regions of Iran. A total of 21 ISSR primers were used which generated 981 bands of different sizes. Mean percentage of polymorphic bands was 90.64 %. Maximum resolving power, polymorphic information content average, and marker index values were 21.55, 0.35, and 14.42 for primers of 3, 4, and 3 respectively. The unweighted pair group method with arithmetic mean dendrogram based on Jaccard's coefficients indicated that 53 accessions were divided into two major clusters. The first major cluster was divided into two subclusters; the subcluster A included Jasminum grandiflorum L., J. officinale L., and J. azoricum L. and the subcluster B consisted of three forms of J. sambac L. (single, semi-double, and double flowers). The second major cluster was divided into two subclusters; the first subcluster (C) included J. humile L., J. primulinum Hemsl., J. nudiflorum Lindl. and the second subcluster (D) consisted of J. fruticans L. At the species level, the highest percentage of polymorphism (34.05 %), numbers of effective alleles (1.16), Shannon index (0.151), and Nei's genetic diversity (0.098) were observed in J. officinale. The lowest values of percentage polymorphism (0.011), number of effective alleles (1.009), Shannon index (0.007), and Nei's genetic diversity (0.005) were obtained for J. nudiflorum. Based on pairwise population matrix of Nei's unbiased genetic identity, the highest identity (0.85) was found between J.officinale and J. azoricum and the lowest identity (0.69) was between J. grandiflorum and J. perimulinum. Based on analysis of molecular variance, the amount of genetic variations among the eight populations was 83 %. This study demonstrated that the ISSR is an useful tool in jasmine genomic diversity studies and to detect their relationships.
机译:在伊朗不同地区,茉莉花有多种​​天然或栽培形式的茉莉花,尚无有关其遗传状况的信息。因此,使用简单序列间重复(ISSR)分析来评估代表从伊朗不同地区收集的八种茉莉的53种材料的遗传变异。总共使用了21条ISSR引物,产生了981条不同大小的条带。多态带的平均百分比为90.64%。对于3、4和3的引物,最大分辨能力,多态信息含量平均值和标记指数值分别为21.55、0.35和14.42。基于Jaccard系数的算术平均树状图的非加权对分组方法表明,将53个种质分为两个主要类群。第一个主要集群分为两个子集群;子集群A包括茉莉,茉莉花和偶氮J.,而子集群B则由桑巴斯李的三种形式组成(单花,半双花和双花)。第二个主要集群分为两个子集群;第一个子集群(C)包括J. humile L.,J。primulinum Hemsl。,J。nudiflorum Lindl。第二个亚类(D)由果蝇(J. fruticans L)组成。在物种水平上,多态性百分比最高(34.05%),有效等位基因数量(1.16),香农指数(0.151)和Nei的遗传多样性(0.098)在J. officinale中观察到。获得了J. nudiflorum的最低百分比多态性(0.011),有效等位基因数(1.009),Shannon指数(0.007)和Nei遗传多样性(0.005)。基于Nei的无偏遗传同一性的成对种群矩阵,在J.officinale和A. azoricum之间发现最高同一性(0.85),而在J. grandiflorum和J. perimulinum之间发现最低同一性(0.69)。根据分子变异分析,八个种群之间的遗传变异量为83%。这项研究表明,ISSR是茉莉花基因组多样性研究和检测它们之间关系的有用工具。

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